Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AASM09_RS17730 Genome accession   NZ_CP154630
Coordinates   3835583..3836842 (+) Length   419 a.a.
NCBI ID   WP_343368554.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain C52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3830583..3841842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AASM09_RS17710 (AASM09_17710) pilR 3830800..3832173 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  AASM09_RS17715 (AASM09_17715) pilB 3832284..3834017 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AASM09_RS17720 (AASM09_17720) pilA/pilAI 3834240..3834647 (-) 408 WP_049429914.1 pilin Machinery gene
  AASM09_RS17725 (AASM09_17725) - 3834798..3835229 (-) 432 WP_049429913.1 pilin -
  AASM09_RS17730 (AASM09_17730) pilC 3835583..3836842 (+) 1260 WP_343368554.1 type II secretion system F family protein Machinery gene
  AASM09_RS17735 (AASM09_17735) - 3836850..3837713 (+) 864 WP_049429911.1 A24 family peptidase -
  AASM09_RS17740 (AASM09_17740) coaE 3837725..3838336 (+) 612 WP_049429910.1 dephospho-CoA kinase -
  AASM09_RS17745 (AASM09_17745) - 3838542..3839909 (-) 1368 WP_049429909.1 HAMP domain-containing sensor histidine kinase -
  AASM09_RS17750 (AASM09_17750) - 3839872..3840549 (-) 678 WP_005410804.1 response regulator transcription factor -
  AASM09_RS17755 (AASM09_17755) - 3840558..3841028 (-) 471 WP_005410805.1 hypothetical protein -
  AASM09_RS17760 (AASM09_17760) - 3841118..3841594 (-) 477 WP_049429908.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45866.27 Da        Isoelectric Point: 10.1071

>NTDB_id=993833 AASM09_RS17730 WP_343368554.1 3835583..3836842(+) (pilC) [Stenotrophomonas maltophilia strain C52]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQLVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSIKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=993833 AASM09_RS17730 WP_343368554.1 3835583..3836842(+) (pilC) [Stenotrophomonas maltophilia strain C52]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCCTCCATGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTAGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGCTGGTGGTGAACCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCCATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCACGCGATGGA
CCGGTTCGTGCTGAAGGTACCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TCACCTTCAAGGCCGGTGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCCACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGTGACGACGTCTCGGTAGGCTACCCGGTGAACATGTCGATTAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGTGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.381

95.227

0.499
  pilC Acinetobacter baylyi ADP1

50.739

96.897

0.492
  pilC Acinetobacter baumannii D1279779

49.14

97.136

0.477
  pilG Neisseria gonorrhoeae MS11

43.719

94.988

0.415
  pilG Neisseria meningitidis 44/76-A

43.467

94.988

0.413
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment