Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SP4011_RS11395 Genome accession   NZ_AP026968
Coordinates   2324903..2326084 (+) Length   393 a.a.
NCBI ID   WP_338619378.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2319903..2331084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS11355 (SP4011_21960) - 2320952..2321494 (+) 543 WP_338619373.1 TetR/AcrR family transcriptional regulator -
  SP4011_RS11370 (SP4011_21970) comE 2321737..2322489 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  SP4011_RS11375 (SP4011_21980) comD/comD1 2322486..2323811 (-) 1326 WP_218757900.1 GHKL domain-containing protein Regulator
  SP4011_RS11380 (SP4011_21990) comC/comC1 2323832..2323957 (-) 126 WP_218757899.1 competence-stimulating peptide ComC Regulator
  SP4011_RS11390 (SP4011_22000) rlmH 2324240..2324719 (-) 480 WP_084367488.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SP4011_RS11395 (SP4011_22010) htrA 2324903..2326084 (+) 1182 WP_338619378.1 S1C family serine protease Regulator
  SP4011_RS11400 (SP4011_22020) spo0J 2326142..2326900 (+) 759 WP_338619379.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41615.43 Da        Isoelectric Point: 6.1498

>NTDB_id=99153 SP4011_RS11395 WP_338619378.1 2324903..2326084(+) (htrA) [Streptococcus parapneumoniae strain SP4011]
MKHLKTFYKKGFQLLVVIVISFFSGALGSFSIAQLTQKSSVSNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDETDTDSQQISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNISTSDIRRLNIPSSVTSGVV
VRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLDKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=99153 SP4011_RS11395 WP_338619378.1 2324903..2326084(+) (htrA) [Streptococcus parapneumoniae strain SP4011]
ATGAAACATTTAAAAACATTTTACAAAAAAGGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAGCTCAACTAACTCAAAAAAGTAGTGTAAGCAACTCTAACAACAATAGCACTATTACACAGACTG
CCTATAAAAACGAAAATTCAACCACTCAGGCTGTTAATAAAGTAAAAGATGCTGTTGTATCCGTTATTACTTATTCAGCA
AATAGACAAAATAGCGTATTTGGCAATGATGAGACTGATACAGATTCTCAGCAAATCTCTAGTGAAGGATCTGGAGTTAT
TTATAAAAAGAATGACAAAGAGGCTTACATTGTCACCAATAATCACGTTATAAATGGTGCCAGTAAAGTAGATATTCGCT
TATCAGATGGAACTAAAGTACCCGGAGAAATTGTCGGAGCGGACACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAATTTGGTGATTCTAGTAAGTTAACCGTAGGAGAAACTGCTATTGCTATTGGTAGCCC
GCTCGGTTCTGAATATGCTAATACTGTCACTCAAGGTATCGTATCTAGTCTCAATCGAAATGTATCTTTAAAATCTGAAG
ATGGACAAGCCATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGCGGTCCACTGATCAAT
ATTCAAGGACAGGTTATCGGAATTACCTCAAGTAAAATTGCCACAAATGGAGGCACATCTGTAGAAGGGCTTGGTTTCGC
AATCCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAGAACGGAAAAGTGACACGCCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATATAAGTACAAGCGACATCAGAAGACTCAATATTCCAAGCAGTGTAACATCTGGCGTAGTT
GTTCGTTCGGTACAAAGTAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTCATTACAAAAGTAGACGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAATCATTCTATCGGAGACACTATTAAGATAACTTACTATCGTA
ACGGTAAAGAAGAAACTACATCTATCAAACTTGACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

98.219

100

0.982

  htrA Streptococcus pneumoniae Rx1

97.71

100

0.977

  htrA Streptococcus pneumoniae D39

97.71

100

0.977

  htrA Streptococcus pneumoniae R6

97.71

100

0.977

  htrA Streptococcus pneumoniae TIGR4

97.71

100

0.977

  htrA Streptococcus gordonii str. Challis substr. CH1

66.414

100

0.669

  htrA Streptococcus mutans UA159

54.822

100

0.55


Multiple sequence alignment