Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SP4011_RS11400 Genome accession   NZ_AP026968
Coordinates   2326142..2326900 (+) Length   252 a.a.
NCBI ID   WP_338619379.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2321142..2331900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS11370 (SP4011_21970) comE 2321737..2322489 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  SP4011_RS11375 (SP4011_21980) comD/comD1 2322486..2323811 (-) 1326 WP_218757900.1 GHKL domain-containing protein Regulator
  SP4011_RS11380 (SP4011_21990) comC/comC1 2323832..2323957 (-) 126 WP_218757899.1 competence-stimulating peptide ComC Regulator
  SP4011_RS11390 (SP4011_22000) rlmH 2324240..2324719 (-) 480 WP_084367488.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SP4011_RS11395 (SP4011_22010) htrA 2324903..2326084 (+) 1182 WP_338619378.1 S1C family serine protease Regulator
  SP4011_RS11400 (SP4011_22020) spo0J 2326142..2326900 (+) 759 WP_338619379.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29044.34 Da        Isoelectric Point: 6.3024

>NTDB_id=99154 SP4011_RS11400 WP_338619379.1 2326142..2326900(+) (spo0J) [Streptococcus parapneumoniae strain SP4011]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPIIGYEILAGERRYRASLLAGLMSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPDAILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRVIEEDISVRKLEALLTEKKQKKQQKNDHFIQNEEEQLKKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=99154 SP4011_RS11400 WP_338619379.1 2326142..2326900(+) (spo0J) [Streptococcus parapneumoniae strain SP4011]
ATGGAAAAATTTGAAATGATTTCTATCACGGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTATTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAATGTCTATCCCAGCTGTTGTTAAACAG
CTTTCAGATCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTGCAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTGCTTTCCTTACCAGATGCTATCCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCACATGCT
CGTTCGCTAGTTGGATTGAATAAGGAACAACAAGACTATTTCTTTCAACGGGTTATAGAAGAAGATATTTCTGTAAGGAA
ATTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAAATGATCATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGATAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment