Detailed information NTG0991490

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH448_RS21745
• Genome accession: NZ_CP153660
• Coordinates: 4406145..4406945 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn113
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4401145..4411945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH448_RS21710 (AAH448_21665)	gspH	4401301..4401816 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
AAH448_RS21715 (AAH448_21670)	gspI	4401813..4402178 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH448_RS21720 (AAH448_21675)	gspJ	4402175..4402771 (+)	597	WP_032422017.1	type II secretion system minor pseudopilin GspJ	-
AAH448_RS21725 (AAH448_21680)	gspK	4402768..4403754 (+)	987	WP_023282192.1	type II secretion system minor pseudopilin GspK	-
AAH448_RS21730 (AAH448_21685)	gspL	4403741..4404934 (+)	1194	WP_004213440.1	type II secretion system protein GspL	-
AAH448_RS21735 (AAH448_21690)	-	4404927..4405412 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAH448_RS21740 (AAH448_21695)	-	4405402..4406148 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH448_RS21745 (AAH448_21700)	pilD	4406145..4406945 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH448_RS21750 (AAH448_21705)	hrpB	4406993..4409422 (-)	2430	WP_032422018.1	ATP-dependent helicase HrpB	-
AAH448_RS21755 (AAH448_21710)	thpR	4409495..4410031 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH448_RS21760 (AAH448_21715)	sfsA	4410031..4410747 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH448_RS21765 (AAH448_21720)	dksA	4410910..4411365 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991490 AAH448_RS21745 WP_004145898.1 4406145..4406945(+) (pilD) [Klebsiella pneumoniae strain Kpn113]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991490 AAH448_RS21745 WP_004145898.1 4406145..4406945(+) (pilD) [Klebsiella pneumoniae strain Kpn113]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425