Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SP4011_RS03825 Genome accession   NZ_AP026968
Coordinates   728166..728636 (+) Length   156 a.a.
NCBI ID   WP_050253293.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 723166..733636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS03820 (SP4011_06840) rpsF 727864..728154 (+) 291 WP_001151778.1 30S ribosomal protein S6 -
  SP4011_RS03825 (SP4011_06850) ssbA 728166..728636 (+) 471 WP_050253293.1 single-stranded DNA-binding protein SsbA Machinery gene
  SP4011_RS03830 (SP4011_06860) rpsR 728668..728907 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SP4011_RS03835 (SP4011_06870) - 729131..729634 (+) 504 WP_338619953.1 GNAT family N-acetyltransferase -
  SP4011_RS03840 (SP4011_06880) - 729716..731116 (+) 1401 WP_338619955.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SP4011_RS03845 (SP4011_06890) - 731118..731477 (+) 360 WP_338619956.1 S1 RNA-binding domain-containing protein -
  SP4011_RS03850 (SP4011_06900) - 731531..732280 (+) 750 WP_023933164.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SP4011_RS03855 (SP4011_06910) - 732270..732554 (+) 285 WP_338619957.1 GIY-YIG nuclease family protein -
  SP4011_RS03860 (SP4011_06920) - 732640..733575 (+) 936 WP_338619959.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17338.17 Da        Isoelectric Point: 4.9164

>NTDB_id=99110 SP4011_RS03825 WP_050253293.1 728166..728636(+) (ssbA) [Streptococcus parapneumoniae strain SP4011]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGGYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=99110 SP4011_RS03825 WP_050253293.1 728166..728636(+) (ssbA) [Streptococcus parapneumoniae strain SP4011]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGTCAACAGGCTGAAAACCTAGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAAGGTCATACAGGTGGAGGTTACTCTGCCCCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.609
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.24

77.564

0.397
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378

Multiple sequence alignment