Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   AAFQ93_RS00705 Genome accession   NZ_CP152419
Coordinates   159948..160382 (-) Length   144 a.a.
NCBI ID   WP_375555362.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 154948..165382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00680 (AAFQ93_00680) - 156138..157844 (-) 1707 WP_375555361.1 ABC transporter ATP-binding protein -
  AAFQ93_RS00685 (AAFQ93_00685) - 158033..158734 (-) 702 WP_000179052.1 histidine phosphatase family protein -
  AAFQ93_RS00690 (AAFQ93_00690) comGG/cglG 158844..159281 (-) 438 WP_223140197.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAFQ93_RS00695 (AAFQ93_00695) comGF/cglF 159259..159720 (-) 462 WP_223140198.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAFQ93_RS00700 (AAFQ93_00700) comGE/cglE 159683..159985 (-) 303 WP_223140199.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAFQ93_RS00705 (AAFQ93_00705) comGD/cglD 159948..160382 (-) 435 WP_375555362.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAFQ93_RS00710 (AAFQ93_00710) comGC/cglC 160345..160668 (-) 324 WP_375555363.1 competence type IV pilus major pilin ComGC Machinery gene
  AAFQ93_RS00715 (AAFQ93_00715) comGB/cglB 160669..161712 (-) 1044 WP_223141129.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAFQ93_RS00720 (AAFQ93_00720) comGA/cglA/cilD 161633..162574 (-) 942 WP_375555364.1 competence type IV pilus ATPase ComGA Machinery gene
  AAFQ93_RS00725 (AAFQ93_00725) - 162633..163010 (-) 378 WP_223140241.1 DUF1033 family protein -
  AAFQ93_RS00730 (AAFQ93_00730) - 163147..164205 (-) 1059 WP_375555365.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16436.03 Da        Isoelectric Point: 10.6724

>NTDB_id=989134 AAFQ93_RS00705 WP_375555362.1 159948..160382(-) (comGD/cglD) [Streptococcus nidrosiense strain SO-23-1]
MQNKRQVKQLRIRAFTMLESLLVLGIVSLLALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSLASQQKMNLVLEERS
ISNGYQKLAIPKGIQLQSTQSITFDKAGGNSSLSNVRFQTRKEVVRYQLYLGNGKIKRIQEAKN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=989134 AAFQ93_RS00705 WP_375555362.1 159948..160382(-) (comGD/cglD) [Streptococcus nidrosiense strain SO-23-1]
ATGCAAAACAAAAGACAAGTCAAACAGTTGCGGATTAGGGCTTTTACTATGCTAGAAAGTTTATTGGTCTTAGGAATAGT
CAGCCTGTTAGCCTTGGGTTTGTCAAGTTCAGTTCAATCAACTTTTGCAGCTGTAGAAGAACAGATTTTCTTTATGGAGT
TTGAGGAACTTTATCGAGAAACCCAGAAACGAAGTCTGGCTAGTCAACAAAAGATGAATTTAGTGTTAGAAGAGAGGAGC
ATTAGTAATGGCTATCAAAAGTTAGCCATTCCTAAAGGGATTCAACTACAGTCCACTCAGTCAATCACTTTTGACAAGGC
TGGAGGAAATTCGTCTCTTTCAAATGTAAGATTTCAAACGAGGAAAGAAGTGGTTCGCTACCAACTATATCTAGGAAATG
GAAAGATTAAACGTATTCAAGAAGCAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

76.389

100

0.764
  comGD/cglD Streptococcus mitis SK321

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae Rx1

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae D39

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae R6

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae TIGR4

77.444

92.361

0.715
  comYD Streptococcus gordonii str. Challis substr. CH1

58.333

91.667

0.535
  comYD Streptococcus mutans UA159

50.382

90.972

0.458
  comYD Streptococcus mutans UA140

50.382

90.972

0.458

Multiple sequence alignment