Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   AAFQ93_RS00690 Genome accession   NZ_CP152419
Coordinates   158844..159281 (-) Length   145 a.a.
NCBI ID   WP_223140197.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153844..164281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00675 (AAFQ93_00675) - 154370..156136 (-) 1767 WP_375555360.1 ABC transporter ATP-binding protein -
  AAFQ93_RS00680 (AAFQ93_00680) - 156138..157844 (-) 1707 WP_375555361.1 ABC transporter ATP-binding protein -
  AAFQ93_RS00685 (AAFQ93_00685) - 158033..158734 (-) 702 WP_000179052.1 histidine phosphatase family protein -
  AAFQ93_RS00690 (AAFQ93_00690) comGG/cglG 158844..159281 (-) 438 WP_223140197.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAFQ93_RS00695 (AAFQ93_00695) comGF/cglF 159259..159720 (-) 462 WP_223140198.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAFQ93_RS00700 (AAFQ93_00700) comGE/cglE 159683..159985 (-) 303 WP_223140199.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAFQ93_RS00705 (AAFQ93_00705) comGD/cglD 159948..160382 (-) 435 WP_375555362.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAFQ93_RS00710 (AAFQ93_00710) comGC/cglC 160345..160668 (-) 324 WP_375555363.1 competence type IV pilus major pilin ComGC Machinery gene
  AAFQ93_RS00715 (AAFQ93_00715) comGB/cglB 160669..161712 (-) 1044 WP_223141129.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAFQ93_RS00720 (AAFQ93_00720) comGA/cglA/cilD 161633..162574 (-) 942 WP_375555364.1 competence type IV pilus ATPase ComGA Machinery gene
  AAFQ93_RS00725 (AAFQ93_00725) - 162633..163010 (-) 378 WP_223140241.1 DUF1033 family protein -
  AAFQ93_RS00730 (AAFQ93_00730) - 163147..164205 (-) 1059 WP_375555365.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16675.03 Da        Isoelectric Point: 10.4805

>NTDB_id=989131 AAFQ93_RS00690 WP_223140197.1 158844..159281(-) (comGG/cglG) [Streptococcus nidrosiense strain SO-23-1]
MWKKKKVRAGVLLYAVTIAGIFSLLLQFYLNRQVAHHQDYALNKEKLLAFAIAKRTYEKASSESGQQSFNAGKATYRNDQ
KGFTAIVDTGKNQFEFRFPPFKKTDDKTKKTEKKSKEESEKKKEEQVKNETTETSKVVPSKNDKT

Nucleotide


Download         Length: 438 bp        

>NTDB_id=989131 AAFQ93_RS00690 WP_223140197.1 158844..159281(-) (comGG/cglG) [Streptococcus nidrosiense strain SO-23-1]
GTGTGGAAAAAGAAAAAAGTTAGAGCTGGAGTTCTCCTTTACGCTGTCACTATTGCCGGAATTTTTAGTCTCTTGTTACA
GTTTTATCTAAATCGACAAGTGGCTCATCATCAGGATTATGCCCTCAATAAAGAAAAACTTCTTGCATTTGCAATTGCTA
AGAGGACCTATGAAAAAGCTAGTTCTGAGAGTGGTCAGCAGTCATTTAATGCAGGAAAGGCAACTTATCGTAATGACCAA
AAGGGATTTACAGCGATTGTTGACACTGGGAAAAATCAATTTGAATTTCGTTTTCCACCTTTTAAAAAGACTGACGACAA
GACGAAGAAAACAGAAAAAAAGTCAAAAGAAGAAAGCGAGAAGAAAAAAGAAGAACAGGTAAAAAATGAGACCACCGAGA
CATCTAAAGTTGTTCCTTCTAAGAATGATAAGACATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

70.707

68.276

0.483
  comGG/cglG Streptococcus pneumoniae D39

70.707

68.276

0.483
  comGG/cglG Streptococcus pneumoniae R6

70.707

68.276

0.483
  comGG/cglG Streptococcus pneumoniae TIGR4

70.707

68.276

0.483
  comGG/cglG Streptococcus mitis SK321

67.677

68.276

0.462
  comGG/cglG Streptococcus mitis NCTC 12261

66.667

68.276

0.455

Multiple sequence alignment