Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   AAFQ93_RS00715 Genome accession   NZ_CP152419
Coordinates   160669..161712 (-) Length   347 a.a.
NCBI ID   WP_223141129.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 155669..166712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00680 (AAFQ93_00680) - 156138..157844 (-) 1707 WP_375555361.1 ABC transporter ATP-binding protein -
  AAFQ93_RS00685 (AAFQ93_00685) - 158033..158734 (-) 702 WP_000179052.1 histidine phosphatase family protein -
  AAFQ93_RS00690 (AAFQ93_00690) comGG/cglG 158844..159281 (-) 438 WP_223140197.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAFQ93_RS00695 (AAFQ93_00695) comGF/cglF 159259..159720 (-) 462 WP_223140198.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAFQ93_RS00700 (AAFQ93_00700) comGE/cglE 159683..159985 (-) 303 WP_223140199.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAFQ93_RS00705 (AAFQ93_00705) comGD/cglD 159948..160382 (-) 435 WP_375555362.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAFQ93_RS00710 (AAFQ93_00710) comGC/cglC 160345..160668 (-) 324 WP_375555363.1 competence type IV pilus major pilin ComGC Machinery gene
  AAFQ93_RS00715 (AAFQ93_00715) comGB/cglB 160669..161712 (-) 1044 WP_223141129.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAFQ93_RS00720 (AAFQ93_00720) comGA/cglA/cilD 161633..162574 (-) 942 WP_375555364.1 competence type IV pilus ATPase ComGA Machinery gene
  AAFQ93_RS00725 (AAFQ93_00725) - 162633..163010 (-) 378 WP_223140241.1 DUF1033 family protein -
  AAFQ93_RS00730 (AAFQ93_00730) - 163147..164205 (-) 1059 WP_375555365.1 zinc-dependent alcohol dehydrogenase family protein -
  AAFQ93_RS00735 (AAFQ93_00735) nagA 164346..165497 (-) 1152 WP_049509183.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39775.21 Da        Isoelectric Point: 9.9073

>NTDB_id=989136 AAFQ93_RS00715 WP_223141129.1 160669..161712(-) (comGB/cglB) [Streptococcus nidrosiense strain SO-23-1]
MDKLTSFLKKDISLPFKLKRRKLATSKQKKIITLFNNLFSSGFHLVEIISFLDRSLLLEKAYVSQMRLGLAQGKSFSEMM
GHLGFSSAIVTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPVILLVFLLLIMMGLRNYLLPQLDSSNIATL
VISNLPQIFLGLVLALGLVSLTGLIFYRKSRKIQVFSFLARIPFLGVFIQYYLTAYYAREWGNMIGQGLELSQIFQMMQE
QGNPLFREIGQDLDQALQNGHEFSKVVQHYPFFRRELGLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLV
FIFVALLIVLLYAAMLLPMYQNMEVNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=989136 AAFQ93_RS00715 WP_223141129.1 160669..161712(-) (comGB/cglB) [Streptococcus nidrosiense strain SO-23-1]
ATGGACAAATTGACCAGCTTCTTAAAGAAGGACATATCACTGCCCTTCAAGCTGAAACGGAGAAAATTAGCTACCAGTAA
GCAGAAGAAAATCATCACTCTCTTTAACAATTTATTTTCTAGTGGTTTTCATCTGGTAGAAATCATTTCCTTTCTAGATA
GAAGTCTCTTGTTGGAAAAGGCATATGTATCGCAGATGCGCCTAGGACTTGCGCAAGGAAAGTCTTTTTCGGAAATGATG
GGTCATTTAGGTTTCTCGAGTGCGATTGTCACGCAACTTTCATTGGCTGAAGTTCATGGGAATCTCCATTTAAGTTTGGG
TAAAATCGAAGAATATTTAGATAATCTAGCTAAGGTCAAGAAGAAGTTAATCGAAGTTGCGACCTATCCAGTCATTTTGT
TAGTTTTCTTACTGCTCATTATGATGGGTTTGCGTAATTATCTCTTGCCTCAACTGGATAGTAGCAACATAGCTACCTTA
GTGATTAGTAACCTGCCACAGATTTTTCTTGGGCTTGTTCTAGCGTTAGGTCTAGTATCTTTAACAGGACTGATATTCTA
CAGAAAATCTAGGAAGATACAAGTATTTTCTTTTCTAGCTAGAATCCCCTTTCTAGGTGTGTTTATTCAGTATTATCTAA
CTGCCTATTATGCTCGAGAATGGGGTAATATGATTGGTCAAGGTCTGGAGCTATCACAGATTTTCCAGATGATGCAGGAG
CAAGGAAATCCTCTTTTTAGGGAAATAGGACAAGATTTAGATCAAGCCTTGCAAAATGGGCATGAATTTTCGAAAGTTGT
GCAACATTATCCTTTCTTTAGAAGAGAGTTGGGTTTAATCATTGAATACGGAGAGGTCAAATCCAAACTGGGGAGCGAAT
TGGAAATCTATGCAGAAAAAACTTGGGAGGCATTTTTTACCCGAGTCAATCGTACCATGAATCTAGTTCAACCGCTGGTA
TTTATTTTTGTAGCCCTGCTAATCGTTTTATTGTACGCAGCCATGTTGCTGCCAATGTATCAAAATATGGAGGTAAATTT
TTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus mitis SK321

81.306

97.118

0.79
  comGB/cglB Streptococcus mitis NCTC 12261

81.009

97.118

0.787
  comGB/cglB Streptococcus pneumoniae Rx1

80.415

97.118

0.781
  comGB/cglB Streptococcus pneumoniae D39

80.415

97.118

0.781
  comGB/cglB Streptococcus pneumoniae R6

80.415

97.118

0.781
  comGB/cglB Streptococcus pneumoniae TIGR4

80.415

97.118

0.781
  comYB Streptococcus gordonii str. Challis substr. CH1

72.174

99.424

0.718
  comYB Streptococcus mutans UA140

58.187

98.559

0.573
  comYB Streptococcus mutans UA159

58.187

98.559

0.573
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.118

0.493

Multiple sequence alignment