Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   AAFQ93_RS00695 Genome accession   NZ_CP152419
Coordinates   159259..159720 (-) Length   153 a.a.
NCBI ID   WP_223140198.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 154259..164720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00675 (AAFQ93_00675) - 154370..156136 (-) 1767 WP_375555360.1 ABC transporter ATP-binding protein -
  AAFQ93_RS00680 (AAFQ93_00680) - 156138..157844 (-) 1707 WP_375555361.1 ABC transporter ATP-binding protein -
  AAFQ93_RS00685 (AAFQ93_00685) - 158033..158734 (-) 702 WP_000179052.1 histidine phosphatase family protein -
  AAFQ93_RS00690 (AAFQ93_00690) comGG/cglG 158844..159281 (-) 438 WP_223140197.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAFQ93_RS00695 (AAFQ93_00695) comGF/cglF 159259..159720 (-) 462 WP_223140198.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAFQ93_RS00700 (AAFQ93_00700) comGE/cglE 159683..159985 (-) 303 WP_223140199.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAFQ93_RS00705 (AAFQ93_00705) comGD/cglD 159948..160382 (-) 435 WP_375555362.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAFQ93_RS00710 (AAFQ93_00710) comGC/cglC 160345..160668 (-) 324 WP_375555363.1 competence type IV pilus major pilin ComGC Machinery gene
  AAFQ93_RS00715 (AAFQ93_00715) comGB/cglB 160669..161712 (-) 1044 WP_223141129.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAFQ93_RS00720 (AAFQ93_00720) comGA/cglA/cilD 161633..162574 (-) 942 WP_375555364.1 competence type IV pilus ATPase ComGA Machinery gene
  AAFQ93_RS00725 (AAFQ93_00725) - 162633..163010 (-) 378 WP_223140241.1 DUF1033 family protein -
  AAFQ93_RS00730 (AAFQ93_00730) - 163147..164205 (-) 1059 WP_375555365.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 18024.61 Da        Isoelectric Point: 10.0497

>NTDB_id=989132 AAFQ93_RS00695 WP_223140198.1 159259..159720(-) (comGF/cglF) [Streptococcus nidrosiense strain SO-23-1]
MGRRNYWRFKISRVRAFTLLESLVALIVISGSLLLFQAMSQLLVSEVRYQQRSEQKEWLLFVDQLAAELNRAQFEKVEND
RLYLKQDGNPISMGKSNSDDFRKTDASGRGYQPMVYGLKSAHIYQKGQNVHFNFQFEKGLEREFIYRVEKEKS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=989132 AAFQ93_RS00695 WP_223140198.1 159259..159720(-) (comGF/cglF) [Streptococcus nidrosiense strain SO-23-1]
ATGGGACGGAGAAATTACTGGCGATTCAAGATAAGTAGGGTCAGAGCTTTTACACTTTTAGAATCCTTGGTTGCCCTTAT
CGTTATTAGTGGTAGCTTGCTCCTTTTTCAAGCTATGAGCCAACTCTTGGTTTCAGAAGTTCGCTATCAGCAGAGAAGTG
AGCAAAAAGAATGGCTTTTATTTGTGGATCAGCTGGCAGCGGAGTTGAATCGAGCCCAGTTTGAAAAAGTGGAGAATGAT
AGACTTTATCTCAAACAGGATGGGAACCCCATTTCCATGGGAAAATCAAATTCAGATGATTTTCGGAAAACAGATGCTAG
TGGACGTGGCTATCAACCCATGGTCTACGGTCTGAAATCAGCACATATTTACCAAAAAGGGCAAAATGTTCATTTCAATT
TTCAGTTTGAAAAGGGACTAGAGAGGGAGTTTATCTATCGTGTGGAAAAAGAAAAAAGTTAG

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(46-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus mitis NCTC 12261

76.471

100

0.765
  comGF/cglF Streptococcus mitis SK321

75.817

100

0.758
  comGF/cglF Streptococcus pneumoniae Rx1

74.51

100

0.745
  comGF/cglF Streptococcus pneumoniae D39

74.51

100

0.745
  comGF/cglF Streptococcus pneumoniae R6

74.51

100

0.745
  comGF/cglF Streptococcus pneumoniae TIGR4

74.51

100

0.745

Multiple sequence alignment