Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AAGT77_RS12675 | Genome accession | NZ_CP152380 |
| Coordinates | 2728669..2729889 (+) | Length | 406 a.a. |
| NCBI ID | WP_342630808.1 | Uniprot ID | - |
| Organism | Marinobacter alkaliphilus strain SBY-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2723669..2734889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGT77_RS12660 (AAGT77_12660) | - | 2724099..2726006 (-) | 1908 | WP_342630805.1 | hypothetical protein | - |
| AAGT77_RS12665 (AAGT77_12665) | - | 2726078..2726701 (-) | 624 | WP_342630806.1 | pilin | - |
| AAGT77_RS12670 (AAGT77_12670) | pilB | 2726954..2728666 (+) | 1713 | WP_342630807.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAGT77_RS12675 (AAGT77_12675) | pilC | 2728669..2729889 (+) | 1221 | WP_342630808.1 | type II secretion system F family protein | Machinery gene |
| AAGT77_RS12680 (AAGT77_12680) | pilD | 2729962..2730837 (+) | 876 | WP_342630809.1 | A24 family peptidase | Machinery gene |
| AAGT77_RS12685 (AAGT77_12685) | coaE | 2730934..2731539 (+) | 606 | WP_342630810.1 | dephospho-CoA kinase | - |
| AAGT77_RS12690 (AAGT77_12690) | - | 2731622..2732620 (+) | 999 | WP_342630811.1 | hypothetical protein | - |
| AAGT77_RS12695 (AAGT77_12695) | tsaA | 2732622..2733371 (+) | 750 | WP_342630812.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44412.30 Da Isoelectric Point: 9.2903
>NTDB_id=988773 AAGT77_RS12675 WP_342630808.1 2728669..2729889(+) (pilC) [Marinobacter alkaliphilus strain SBY-1]
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFAASLRKHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFETLFEGFGADLPVFTQFIIGISEWMQKWWFVVLLGIIGTIFLFK
ESKRRSQAFSDFVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIMNIKNDVSSGT
QLQASMRQQDIFPVMAVQLTAIGEESGNLDGMLQKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVVG
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFAASLRKHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFETLFEGFGADLPVFTQFIIGISEWMQKWWFVVLLGIIGTIFLFK
ESKRRSQAFSDFVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIMNIKNDVSSGT
QLQASMRQQDIFPVMAVQLTAIGEESGNLDGMLQKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVVG
Nucleotide
Download Length: 1221 bp
>NTDB_id=988773 AAGT77_RS12675 WP_342630808.1 2728669..2729889(+) (pilC) [Marinobacter alkaliphilus strain SBY-1]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGCAAAGACCGGAAGGGCAACAAGACGAAGGGTGAGCT
GACCGGCTCGAACCTGGCCTTGGTGAAAGCCCAACTGCGAAAGCAGGGCATCATCCCAGACAAGGTCAAGAAGAAGCCCA
AGCCGTTGTTTGGTGGCAGCAAGAAAATCACGCCATTTGATATTGCGATGCTGACCCGCCAACTGGCCACCATGATGAAG
GCTGGTGTGCCTTTGGTACAAAGCTTCGACATTGTGGCGGATGGCCTTGAGAACAAAGGCCTTCAGGAGCTGGTGATGAG
TATCCGAAACGATATTTCCTCGGGTACGGGTTTCGCTGCTTCTTTGCGCAAACATCCAAAACACTTTGACGATTTGTACT
GCAACCTTGTGGATTCTGGCGAAAAAGCTGGTGCGCTGGAGCAGATGCTAGACCGTATCGCTACCTATCTTGAGAAGACA
GAAATTCTGAAGAAGAAGGTAAAAAAGGCGATGACCTATCCCATCGCTGTTATCGTTGTTGCAATCGTAGTTACGGCAAT
TCTTTTGGTGAAAGTCGTCCCACAGTTTGAAACTCTATTCGAGGGCTTCGGTGCAGATCTTCCAGTATTCACTCAGTTCA
TCATTGGAATATCAGAGTGGATGCAGAAATGGTGGTTTGTTGTGTTGCTCGGGATTATCGGTACGATCTTTCTGTTCAAG
GAGTCAAAACGTAGATCTCAGGCATTTTCAGATTTTGTCGATAAATACGTTTTGAAACTACCAGTTGTTGGTGAGATTCT
GGACAAGTCTGCAGTTGCCAAGTTTGGCCGAGTTCTTTCGACAACCTTCGCGGCCGGCGTTCCCCTAGTTGATGCGTTGG
ATTCTGTAGCCGGAGCCACGGGCAATGCGGTTTACCGGGACGCCATCATGAACATCAAAAACGATGTTTCCAGCGGCACT
CAACTGCAGGCGTCTATGCGCCAACAAGATATTTTCCCCGTTATGGCTGTTCAATTAACTGCCATTGGCGAAGAGTCAGG
CAATCTGGACGGCATGCTTCAGAAAGTTGCTGAACACTACGAAGCCGTTGTGGATGACATGGTTGACAATCTGACAGCCC
TTATGGAGCCAATGATTATGGCGGTACTGGGCGTTCTAGTGGGCGGTTTGATCATCGGCATGTACCTGCCAATCTTCCAG
ATGGGTCAAGTTGTCGGCTAA
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGCAAAGACCGGAAGGGCAACAAGACGAAGGGTGAGCT
GACCGGCTCGAACCTGGCCTTGGTGAAAGCCCAACTGCGAAAGCAGGGCATCATCCCAGACAAGGTCAAGAAGAAGCCCA
AGCCGTTGTTTGGTGGCAGCAAGAAAATCACGCCATTTGATATTGCGATGCTGACCCGCCAACTGGCCACCATGATGAAG
GCTGGTGTGCCTTTGGTACAAAGCTTCGACATTGTGGCGGATGGCCTTGAGAACAAAGGCCTTCAGGAGCTGGTGATGAG
TATCCGAAACGATATTTCCTCGGGTACGGGTTTCGCTGCTTCTTTGCGCAAACATCCAAAACACTTTGACGATTTGTACT
GCAACCTTGTGGATTCTGGCGAAAAAGCTGGTGCGCTGGAGCAGATGCTAGACCGTATCGCTACCTATCTTGAGAAGACA
GAAATTCTGAAGAAGAAGGTAAAAAAGGCGATGACCTATCCCATCGCTGTTATCGTTGTTGCAATCGTAGTTACGGCAAT
TCTTTTGGTGAAAGTCGTCCCACAGTTTGAAACTCTATTCGAGGGCTTCGGTGCAGATCTTCCAGTATTCACTCAGTTCA
TCATTGGAATATCAGAGTGGATGCAGAAATGGTGGTTTGTTGTGTTGCTCGGGATTATCGGTACGATCTTTCTGTTCAAG
GAGTCAAAACGTAGATCTCAGGCATTTTCAGATTTTGTCGATAAATACGTTTTGAAACTACCAGTTGTTGGTGAGATTCT
GGACAAGTCTGCAGTTGCCAAGTTTGGCCGAGTTCTTTCGACAACCTTCGCGGCCGGCGTTCCCCTAGTTGATGCGTTGG
ATTCTGTAGCCGGAGCCACGGGCAATGCGGTTTACCGGGACGCCATCATGAACATCAAAAACGATGTTTCCAGCGGCACT
CAACTGCAGGCGTCTATGCGCCAACAAGATATTTTCCCCGTTATGGCTGTTCAATTAACTGCCATTGGCGAAGAGTCAGG
CAATCTGGACGGCATGCTTCAGAAAGTTGCTGAACACTACGAAGCCGTTGTGGATGACATGGTTGACAATCTGACAGCCC
TTATGGAGCCAATGATTATGGCGGTACTGGGCGTTCTAGTGGGCGGTTTGATCATCGGCATGTACCTGCCAATCTTCCAG
ATGGGTCAAGTTGTCGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
65.432 |
99.754 |
0.653 |
| pilC | Acinetobacter baumannii D1279779 |
57.778 |
99.754 |
0.576 |
| pilC | Acinetobacter baylyi ADP1 |
57.143 |
100 |
0.571 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.709 |
100 |
0.527 |
| pilG | Neisseria gonorrhoeae MS11 |
41.626 |
100 |
0.416 |
| pilG | Neisseria meningitidis 44/76-A |
41.379 |
100 |
0.414 |
| pilC | Vibrio campbellii strain DS40M4 |
39.066 |
100 |
0.392 |
| pilC | Vibrio cholerae strain A1552 |
38.916 |
100 |
0.389 |