Detailed information NTG0098620

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8623_RS09740
• Genome accession: NZ_AP026928
• Coordinates: 1878089..1878493 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588030.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700406
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1873089..1883493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8623_RS09700 (PC0401_18720)	rnpA	1873511..1873882 (-)	372	WP_000739247.1	ribonuclease P protein component	-
R8623_RS09705	-	1873899..1874030 (-)	132	WP_000768904.1	hypothetical protein	-
R8623_RS09710 (PC0401_18730)	-	1874031..1875221 (-)	1191	WP_000167765.1	acetate kinase	-
R8623_RS09715 (PC0401_18740)	comYH	1875272..1876225 (-)	954	WP_000345122.1	class I SAM-dependent methyltransferase	Machinery gene
R8623_RS09720 (PC0401_18750)	-	1876286..1876873 (-)	588	WP_000679779.1	class I SAM-dependent methyltransferase	-
R8623_RS09725 (PC0401_18760)	comGG/cglG	1876976..1877422 (-)	447	WP_001811371.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8623_RS09730	comGF/cglF	1877400..1877861 (-)	462	WP_000250539.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8623_RS09735 (PC0401_18780)	comGE/cglE	1877824..1878126 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8623_RS09740 (PC0401_18790)	comGD/cglD	1878089..1878493 (-)	405	WP_000588030.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8623_RS09745 (PC0401_18800)	comGC/cglC	1878486..1878812 (-)	327	WP_000738625.1	competence type IV pilus major pilin ComGC	Machinery gene
R8623_RS09750 (PC0401_18810)	comGB/cglB	1878814..1879830 (-)	1017	WP_074017570.1	competence type IV pilus assembly protein ComGB	Machinery gene
R8623_RS09755 (PC0401_18820)	comGA/cglA/cilD	1879778..1880719 (-)	942	WP_000249555.1	competence type IV pilus ATPase ComGA	Machinery gene
R8623_RS09760 (PC0401_18830)	-	1880753..1881157 (-)	405	WP_317649603.1	DUF1033 family protein	-
R8623_RS09765 (PC0401_18840)	-	1881308..1882366 (-)	1059	WP_000649471.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=98620 R8623_RS09740 WP_000588030.1 1878089..1878493(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700406]
MIKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=98620 R8623_RS09740 WP_000588030.1 1878089..1878493(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700406]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTATCCAGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	48.438	95.522	0.463
comYD	Streptococcus mutans UA159	48.438	95.522	0.463