Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACN2WE_RS14500 Genome accession   NZ_CP183921
Coordinates   3072125..3072784 (-) Length   219 a.a.
NCBI ID   WP_111668325.1    Uniprot ID   -
Organism   Streptomyces sp. cg28     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067125..3077784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2WE_RS14490 (ACN2WE_14490) - 3069628..3070605 (+) 978 WP_420033650.1 hypothetical protein -
  ACN2WE_RS14495 (ACN2WE_14495) clpX 3070683..3071969 (-) 1287 WP_111668326.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACN2WE_RS14500 (ACN2WE_14500) clpP 3072125..3072784 (-) 660 WP_111668325.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN2WE_RS14505 (ACN2WE_14505) clpP 3072844..3073449 (-) 606 WP_111668324.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN2WE_RS14510 (ACN2WE_14510) tig 3073840..3075207 (-) 1368 WP_420033651.1 trigger factor -
  ACN2WE_RS14525 (ACN2WE_14525) - 3075822..3076016 (-) 195 WP_111668373.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24081.39 Da        Isoelectric Point: 4.5229

>NTDB_id=983354 ACN2WE_RS14500 WP_111668325.1 3072125..3072784(-) (clpP) [Streptomyces sp. cg28]
MNNTPGSGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQASSAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAANE
ILRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIISTRKMNNEAIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=983354 ACN2WE_RS14500 WP_111668325.1 3072125..3072784(-) (clpP) [Streptomyces sp. cg28]
ATGAACAACACCCCCGGCAGCGGCCTCTACACGGGCCCGCAGGTCGACAACCGCTACGTGATCCCGCGCTTCGTCGAGCG
CACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCG
ACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGTGACATCTCCATCTAC
ATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGAC
GGTCTGCATGGGCCAGGCGTCCTCCGCGGCCGCCGTCCTGCTCGCCGCCGGCACCCCGGGCAAGCGCATGGCCCTGCCGA
ACGCGCGCGTCCTGATCCACCAGCCCTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCGGCCAACGAG
ATCCTCCGGATGCGTACGCAGCTGGAAGAGATGCTGGCCAAGCACTCGACGACGCCGATCGAGAAGATCCGCGACGACAT
CGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGGTCGACCAGATCATCTCGACCCGCAAGATGA
ACAACGAGGCGATCGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

86.758

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.845

0.425
  clpP Streptococcus pyogenes JRS4

45.96

90.411

0.416
  clpP Streptococcus pyogenes MGAS315

45.96

90.411

0.416
  clpP Streptococcus mutans UA159

45.455

90.411

0.411
  clpP Streptococcus thermophilus LMD-9

45.128

89.041

0.402
  clpP Streptococcus thermophilus LMG 18311

45.128

89.041

0.402
  clpP Streptococcus pneumoniae R6

44.388

89.498

0.397
  clpP Streptococcus pneumoniae TIGR4

44.388

89.498

0.397
  clpP Streptococcus pneumoniae Rx1

44.388

89.498

0.397
  clpP Streptococcus pneumoniae D39

44.388

89.498

0.397
  clpP Lactococcus lactis subsp. cremoris KW2

43.367

89.498

0.388
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.347

89.498

0.379

Multiple sequence alignment