Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACN2WE_RS14505 Genome accession   NZ_CP183921
Coordinates   3072844..3073449 (-) Length   201 a.a.
NCBI ID   WP_111668324.1    Uniprot ID   -
Organism   Streptomyces sp. cg28     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067844..3078449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2WE_RS14490 (ACN2WE_14490) - 3069628..3070605 (+) 978 WP_420033650.1 hypothetical protein -
  ACN2WE_RS14495 (ACN2WE_14495) clpX 3070683..3071969 (-) 1287 WP_111668326.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACN2WE_RS14500 (ACN2WE_14500) clpP 3072125..3072784 (-) 660 WP_111668325.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN2WE_RS14505 (ACN2WE_14505) clpP 3072844..3073449 (-) 606 WP_111668324.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN2WE_RS14510 (ACN2WE_14510) tig 3073840..3075207 (-) 1368 WP_420033651.1 trigger factor -
  ACN2WE_RS14525 (ACN2WE_14525) - 3075822..3076016 (-) 195 WP_111668373.1 hypothetical protein -
  ACN2WE_RS14530 (ACN2WE_14530) - 3076687..3077859 (+) 1173 WP_420033652.1 acyltransferase family protein -
  ACN2WE_RS14535 (ACN2WE_14535) - 3077856..3078311 (-) 456 WP_420033653.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21182.96 Da        Isoelectric Point: 4.4663

>NTDB_id=983355 ACN2WE_RS14505 WP_111668324.1 3072844..3073449(-) (clpP) [Streptomyces sp. cg28]
MPSAAGEPSIGGGLGDHVYNRLLGERIVFLGQQVDDEIANKITAQMLLLAADPDKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKQRMARITAEHSGQTIE
TIIRDGDRDRWYTAEEAKDYGLIDEIITAATGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=983355 ACN2WE_RS14505 WP_111668324.1 3072844..3073449(-) (clpP) [Streptomyces sp. cg28]
ATGCCTTCCGCCGCAGGCGAGCCGTCCATCGGTGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCTCGGCGAGCGGAT
CGTCTTCCTCGGCCAGCAGGTCGACGACGAAATCGCCAACAAGATCACCGCGCAGATGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACGATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACGGGTGGCACGGCCGG
AAAGCGCTTCGCGCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCGCCTCCGACGTCA
AGATCCAGGCCGAGTACCTGCTGCGTACGAAGCAGCGCATGGCCAGGATCACGGCCGAGCACTCCGGCCAGACCATCGAG
ACGATCATCCGTGACGGTGACCGCGACCGCTGGTACACCGCGGAGGAGGCCAAGGACTACGGCCTCATCGACGAGATCAT
CACTGCCGCTACGGGTGTTCCGGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.087

91.542

0.468
  clpP Bacillus subtilis subsp. subtilis str. 168

54.651

85.572

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.099

90.547

0.463
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.543

91.542

0.463
  clpP Streptococcus mutans UA159

52.601

86.07

0.453
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMG 18311

51.724

86.567

0.448
  clpP Streptococcus thermophilus LMD-9

51.724

86.567

0.448
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438

Multiple sequence alignment