Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAFX31_RS12785 Genome accession   NZ_CP151941
Coordinates   1050641..1051870 (+) Length   409 a.a.
NCBI ID   WP_411062151.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045641..1056870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS12765 (AAFX31_12775) ampD 1046682..1047282 (-) 601 Protein_861 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AAFX31_RS12770 (AAFX31_12780) nadC 1047366..1048256 (+) 891 WP_004738163.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AAFX31_RS12775 (AAFX31_12785) - 1048511..1048939 (+) 429 WP_411062149.1 pilin -
  AAFX31_RS12780 (AAFX31_12790) pilB 1048940..1050625 (+) 1686 WP_411062150.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAFX31_RS12785 (AAFX31_12795) pilC 1050641..1051870 (+) 1230 WP_411062151.1 type II secretion system F family protein Machinery gene
  AAFX31_RS12790 (AAFX31_12800) pilD 1051937..1052806 (+) 870 WP_102426438.1 prepilin peptidase Machinery gene
  AAFX31_RS12795 (AAFX31_12805) coaE 1052809..1053423 (+) 615 WP_061032470.1 dephospho-CoA kinase -
  AAFX31_RS12800 (AAFX31_12810) zapD 1053450..1054190 (+) 741 WP_061032469.1 cell division protein ZapD -
  AAFX31_RS12805 (AAFX31_12815) yacG 1054271..1054468 (+) 198 WP_008222354.1 DNA gyrase inhibitor YacG -
  AAFX31_RS12810 (AAFX31_12820) rplS 1054841..1055194 (-) 354 WP_004738151.1 50S ribosomal protein L19 -
  AAFX31_RS12815 (AAFX31_12825) trmD 1055254..1055994 (-) 741 WP_061032468.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AAFX31_RS12820 (AAFX31_12830) rimM 1056022..1056576 (-) 555 WP_061032467.1 ribosome maturation factor RimM -
  AAFX31_RS12825 (AAFX31_12835) rpsP 1056601..1056849 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45257.23 Da        Isoelectric Point: 10.0799

>NTDB_id=981399 AAFX31_RS12785 WP_411062151.1 1050641..1051870(+) (pilC) [Vibrio chagasii strain TBV018]
MISKTKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKDQHIQIKKIKKKSISALTRLTHRVKSRDITVLTRQLAT
MLGTGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVTVALTVSYLMLTIVIPEFESMFSGFGADLPWFTQQVLELSHWMQAYSFYTFVGAGLAAL
VIYQLCQRSYSIRLSTSRLGLRFPILGGVMAKASIAKFSRTLSTSFGSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGIPMYIAMRNTNAFPEMMLQMVMIGEESGNLDEMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGSVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=981399 AAFX31_RS12785 WP_411062151.1 1050641..1051870(+) (pilC) [Vibrio chagasii strain TBV018]
ATGATCAGCAAAACTAAGCAATCACAATTAAAAAGCTACCACTGGAAAGGCATCAATAGCTCCGGTAAAAAAGTATCAGG
GCAAACCTTAGCGCTTACCGAATTAGAAGTACGTGAAAAGCTCAAAGATCAGCATATCCAGATAAAGAAAATCAAAAAGA
AAAGCATCTCGGCACTGACGCGTTTAACCCATAGAGTTAAATCTAGAGACATCACCGTGCTGACCCGCCAGCTTGCGACC
ATGCTAGGAACCGGAGTCCCAATTGTACAGGCGATTAAGTTGGTCTCAGATAACCACCGCAAAGCTGAAATGAAATCTAT
CCTGTCACACATCTGTAAAGGTGTTGAAGCTGGTACACCTATATCCAAAGCGATGCGAACCGCAAGTCGTCACTTTGATG
ACCTCTATACCGATTTAGTCGCAACGGGTGAGCTCTCGGGCAACCTTGCGCAAGTATTTGAACGCCTAGCGACCTATCGT
GAGAAGAGTGAACAGCTCAAGTCTAAAGTCATCAAGGCGCTCATCTATCCTGCAATGGTGGTCACTGTCGCACTCACTGT
CTCCTATTTAATGCTGACCATAGTGATTCCTGAGTTTGAGTCGATGTTTTCAGGCTTTGGTGCCGACCTCCCTTGGTTTA
CACAGCAAGTACTAGAGCTTTCTCATTGGATGCAGGCATACAGCTTTTATACATTTGTAGGTGCAGGGTTAGCAGCCTTA
GTTATCTATCAACTCTGTCAGCGTTCCTACTCGATTCGATTATCGACCAGCCGCTTGGGGTTAAGGTTTCCAATTCTAGG
CGGTGTCATGGCCAAAGCCTCCATTGCCAAATTCAGTCGCACACTATCAACCAGTTTCGGTTCTGGTATCCCCATTCTCA
TGAGTCTAAAAACCACAGCCAAAACCGCAGGTAATTTGCACTATGAATCGGCAATCATCGAAGTACATCGCGAAACCGCT
GCGGGCATTCCAATGTATATCGCAATGCGAAATACCAACGCCTTTCCTGAGATGATGTTGCAGATGGTGATGATTGGCGA
AGAGTCAGGCAACCTTGATGAAATGCTCAACAAAGTCGCCTCGATTTACGAGTTTGAAGTCGACAACACCGTCGATAATT
TGGGCAAAATATTAGAACCGCTGATCATTGTGTTTTTAGGATCCGTCGTAGGCGGTCTTGTGGTTGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.765

99.022

0.78
  pilC Vibrio campbellii strain DS40M4

72.549

99.756

0.724
  pilC Acinetobacter baylyi ADP1

41.975

99.022

0.416
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Legionella pneumophila strain ERS1305867

41.604

97.555

0.406
  pilG Neisseria gonorrhoeae MS11

40.602

97.555

0.396
  pilC Pseudomonas stutzeri DSM 10701

40.909

96.822

0.396
  pilG Neisseria meningitidis 44/76-A

40.351

97.555

0.394

Multiple sequence alignment