Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAFX31_RS12790 | Genome accession | NZ_CP151941 |
| Coordinates | 1051937..1052806 (+) | Length | 289 a.a. |
| NCBI ID | WP_102426438.1 | Uniprot ID | A0A7Y4FRV0 |
| Organism | Vibrio chagasii strain TBV018 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1046937..1057806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX31_RS12770 (AAFX31_12780) | nadC | 1047366..1048256 (+) | 891 | WP_004738163.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AAFX31_RS12775 (AAFX31_12785) | - | 1048511..1048939 (+) | 429 | WP_411062149.1 | pilin | - |
| AAFX31_RS12780 (AAFX31_12790) | pilB | 1048940..1050625 (+) | 1686 | WP_411062150.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAFX31_RS12785 (AAFX31_12795) | pilC | 1050641..1051870 (+) | 1230 | WP_411062151.1 | type II secretion system F family protein | Machinery gene |
| AAFX31_RS12790 (AAFX31_12800) | pilD | 1051937..1052806 (+) | 870 | WP_102426438.1 | prepilin peptidase | Machinery gene |
| AAFX31_RS12795 (AAFX31_12805) | coaE | 1052809..1053423 (+) | 615 | WP_061032470.1 | dephospho-CoA kinase | - |
| AAFX31_RS12800 (AAFX31_12810) | zapD | 1053450..1054190 (+) | 741 | WP_061032469.1 | cell division protein ZapD | - |
| AAFX31_RS12805 (AAFX31_12815) | yacG | 1054271..1054468 (+) | 198 | WP_008222354.1 | DNA gyrase inhibitor YacG | - |
| AAFX31_RS12810 (AAFX31_12820) | rplS | 1054841..1055194 (-) | 354 | WP_004738151.1 | 50S ribosomal protein L19 | - |
| AAFX31_RS12815 (AAFX31_12825) | trmD | 1055254..1055994 (-) | 741 | WP_061032468.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AAFX31_RS12820 (AAFX31_12830) | rimM | 1056022..1056576 (-) | 555 | WP_061032467.1 | ribosome maturation factor RimM | - |
| AAFX31_RS12825 (AAFX31_12835) | rpsP | 1056601..1056849 (-) | 249 | WP_004410028.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32533.73 Da Isoelectric Point: 7.6359
>NTDB_id=981400 AAFX31_RS12790 WP_102426438.1 1051937..1052806(+) (pilD) [Vibrio chagasii strain TBV018]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSVPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTATLCTVVASHFGFSFYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGM
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSVPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTATLCTVVASHFGFSFYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGM
Nucleotide
Download Length: 870 bp
>NTDB_id=981400 AAFX31_RS12790 WP_102426438.1 1051937..1052806(+) (pilD) [Vibrio chagasii strain TBV018]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCGGTATTAGCATTCATTTTTAGTCTTCTGATTGGCAGCTTCCTTAA
CGTCGTCATACATCGTTTACCTATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAGTATTTCTCCCAATATAAAA
TTCCTGCGCCAGAAGGTAAGTTCAACCTCAGTGTTCCTCGCTCTACTTGCCCTAAATGTAAAACTCAATTAAGAATCGTC
GACAATATTCCAGTGTTAAGCTGGTTGTTCTTGAAGGGTAAGTGTCACAGCTGTGCTAATCCAATCAGCGCTCGCTACCC
TTTGGTTGAACTGCTGACTGCGACACTTTGCACAGTTGTTGCCAGTCACTTTGGTTTCAGTTTTTACGCTATTGCACTGA
TATTTTTCACCTTTGCGTTAATTACCGCGACTTTTATCGACCTCGACACCATGCTATTGCCTGACCAAATTACCTTGCCG
TTAGTTTGGTCTGGTATCGCTTTAGCCCTATTTAATATCAGTCCAGTATCGCTTCAAGACTCAGTAGTCGGCGCTATGGC
TGGCTACCTCGCGTTATGGTCCGTCTACTGGCTGTTCAAACTGCTGACAGGTAAAGAAGGCATGGGTTACGGTGACTTCA
AGTTACTGGCTGCACTTGGCGCATGGCTGGGTTGGCAGCATCTACCGATGATCATCCTGCTGTCTTCGCTTGTTGGCCTG
GTGTTTGGTTTGATTCAGCTGCGCTTGAAACAGCAAGGCATTGATAAAGCCTTCCCATTCGGCCCTTACCTTGCGATTGC
TGGTTGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCAGTATTAGGAATGTAA
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCGGTATTAGCATTCATTTTTAGTCTTCTGATTGGCAGCTTCCTTAA
CGTCGTCATACATCGTTTACCTATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAGTATTTCTCCCAATATAAAA
TTCCTGCGCCAGAAGGTAAGTTCAACCTCAGTGTTCCTCGCTCTACTTGCCCTAAATGTAAAACTCAATTAAGAATCGTC
GACAATATTCCAGTGTTAAGCTGGTTGTTCTTGAAGGGTAAGTGTCACAGCTGTGCTAATCCAATCAGCGCTCGCTACCC
TTTGGTTGAACTGCTGACTGCGACACTTTGCACAGTTGTTGCCAGTCACTTTGGTTTCAGTTTTTACGCTATTGCACTGA
TATTTTTCACCTTTGCGTTAATTACCGCGACTTTTATCGACCTCGACACCATGCTATTGCCTGACCAAATTACCTTGCCG
TTAGTTTGGTCTGGTATCGCTTTAGCCCTATTTAATATCAGTCCAGTATCGCTTCAAGACTCAGTAGTCGGCGCTATGGC
TGGCTACCTCGCGTTATGGTCCGTCTACTGGCTGTTCAAACTGCTGACAGGTAAAGAAGGCATGGGTTACGGTGACTTCA
AGTTACTGGCTGCACTTGGCGCATGGCTGGGTTGGCAGCATCTACCGATGATCATCCTGCTGTCTTCGCTTGTTGGCCTG
GTGTTTGGTTTGATTCAGCTGCGCTTGAAACAGCAAGGCATTGATAAAGCCTTCCCATTCGGCCCTTACCTTGCGATTGC
TGGTTGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCAGTATTAGGAATGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
74.394 |
100 |
0.744 |
| pilD | Vibrio cholerae strain A1552 |
68.75 |
99.654 |
0.685 |
| pilD | Acinetobacter nosocomialis M2 |
51.311 |
92.388 |
0.474 |
| pilD | Acinetobacter baumannii D1279779 |
50.936 |
92.388 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
48.649 |
89.619 |
0.436 |