Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAFX31_RS12845 Genome accession   NZ_CP151941
Coordinates   1060963..1061481 (-) Length   172 a.a.
NCBI ID   WP_171731672.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055963..1066481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS12820 (AAFX31_12830) rimM 1056022..1056576 (-) 555 WP_061032467.1 ribosome maturation factor RimM -
  AAFX31_RS12825 (AAFX31_12835) rpsP 1056601..1056849 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  AAFX31_RS12830 (AAFX31_12840) ffh 1057069..1058460 (-) 1392 WP_061032466.1 signal recognition particle protein -
  AAFX31_RS12835 (AAFX31_12845) - 1058661..1059455 (+) 795 WP_004738143.1 inner membrane protein YpjD -
  AAFX31_RS12840 (AAFX31_12850) - 1059583..1060854 (+) 1272 WP_008221067.1 HlyC/CorC family transporter -
  AAFX31_RS12845 (AAFX31_12855) luxS 1060963..1061481 (-) 519 WP_171731672.1 S-ribosylhomocysteine lyase Regulator
  AAFX31_RS12850 (AAFX31_12860) - 1061506..1062156 (-) 651 WP_061032463.1 hypothetical protein -
  AAFX31_RS12855 (AAFX31_12865) gshA 1062167..1063735 (-) 1569 WP_061032462.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18891.66 Da        Isoelectric Point: 4.5912

>NTDB_id=981401 AAFX31_RS12845 WP_171731672.1 1060963..1061481(-) (luxS) [Vibrio chagasii strain TBV018]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAQLNGADVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=981401 AAFX31_RS12845 WP_171731672.1 1060963..1061481(-) (luxS) [Vibrio chagasii strain TBV018]
ATGCCTTTATTAGATAGTTTTACTGTAGATCACACTCGTATGAACGCACCAGCAGTTCGTGTTGCGAAAACAATGCAAAC
TCCAAAAGGGGATACCATTACGGTATTTGACCTGCGTTTTACGGCACCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ACACTCTAGAGCACCTATACGCTGGTTTCATGCGTGCTCAACTGAACGGTGCAGACGTAGAGATCATCGATATTTCACCT
ATGGGCTGTCGTACAGGTTTCTACATGAGCCTGATTGGTACACCTTCAGAGCAGCAAGTTGCTGATGCTTGGTTAGCGGC
AATGCAAGACGTGCTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAGTGTGGTACAGCAGCAATGC
ACTCTTTGGACGAAGCGAAAGAGATCGCGAATGCCATCATCGCTGCTGGTATCTCAGTAAACAAGAATGACGAACTAGCA
CTGCCTGAGTCAATGCTTAAAGAGCTTAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment