Detailed information NTG0980929

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AAFF32_RS07805
• Genome accession: NZ_CP151802
• Coordinates: 1693248..1694507 (-)
• Length: 419 a.a.
• NCBI ID: WP_216960198.1
• Uniprot ID: A0AAP2H9Z5
• Organism: Lysobacter sp. FW306-1B-D06B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1688248..1699507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFF32_RS07790 (AAFF32_07790)	-	1690641..1691639 (+)	999	WP_342316994.1	Nudix family hydrolase	-
AAFF32_RS07795 (AAFF32_07795)	coaE	1691666..1692283 (-)	618	WP_342316995.1	dephospho-CoA kinase	-
AAFF32_RS07800 (AAFF32_07800)	-	1692339..1693202 (-)	864	WP_216960201.1	A24 family peptidase	-
AAFF32_RS07805 (AAFF32_07805)	pilC	1693248..1694507 (-)	1260	WP_216960198.1	type II secretion system F family protein	Machinery gene
AAFF32_RS07810 (AAFF32_07810)	pilB	1694511..1696232 (-)	1722	WP_342316996.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAFF32_RS07815 (AAFF32_07815)	-	1696330..1699371 (-)	3042	WP_342316997.1	fused MFS/spermidine synthase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45426.68 Da
• Isoelectric Point: 10.3217

>NTDB_id=980929 AAFF32_RS07805 WP_216960198.1 1693248..1694507(-) (pilC) [Lysobacter sp. FW306-1B-D06B]
MSATRTATKTAPATRRPNAMGVFVWQGTDKRGKVMKGEQPAKNANALRAELRRQGITPRTVKPKGKPLLGGAGRRITPLD
IAIFSRQLATMMKSGVPIVGAIEIIANGNKNPRMTTMLNSIRSDLESGSSLYESLSKHPVQFDELYRNLVKAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAAVVAVALIVSSILLVFVVPQFESVFKSFGADLPAFTKMVISMSDFMVAYWWL
VLMIVVGTIVAFVMAKNRSVAFSRFLDRMILKLPVVGQILHNSAVARFSRTLAVTFKAGVPLVEALDIVAGATGNVVYED
AVRNIRDDVSVGYPVNMAMKQVNVFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPMIMVFLGVVV
GGMVVAMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=980929 AAFF32_RS07805 WP_216960198.1 1693248..1694507(-) (pilC) [Lysobacter sp. FW306-1B-D06B]
ATGTCCGCGACCCGTACCGCCACCAAAACCGCTCCCGCCACACGCCGCCCCAATGCGATGGGTGTCTTCGTCTGGCAGGG
CACCGACAAGCGCGGCAAGGTGATGAAGGGCGAGCAGCCGGCGAAGAACGCCAACGCGCTGCGCGCCGAACTCCGCCGCC
AGGGCATCACGCCGCGCACGGTCAAGCCCAAGGGCAAGCCACTGCTGGGCGGTGCCGGCCGTCGCATCACCCCGCTCGAC
ATCGCGATCTTCAGCCGCCAGCTGGCAACGATGATGAAGTCGGGTGTGCCGATCGTCGGCGCCATCGAGATCATCGCGAA
CGGCAACAAGAATCCGCGTATGACGACGATGCTCAACTCGATCCGGTCGGATCTGGAGAGCGGCTCCTCCCTGTACGAAT
CGCTGAGCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGTGAAGGCGCGGGCGTGCTGGAG
ACCGTGCTCGACACGGTCGCCACGTACAAGGAAAACATCGAAGCCCTGAAGGGCAAGATCAAGAAGGCGATGTTCTACCC
CGCCGCGGTGGTCGCGGTGGCGCTGATCGTGTCGTCGATCCTGCTCGTCTTCGTGGTGCCCCAGTTCGAGAGCGTGTTCA
AGAGCTTCGGCGCGGACCTGCCAGCGTTCACCAAGATGGTGATCTCGATGAGCGACTTCATGGTCGCTTATTGGTGGCTG
GTGCTGATGATCGTTGTGGGCACCATCGTCGCCTTCGTCATGGCGAAGAACCGATCCGTGGCGTTCTCACGCTTCCTCGA
CCGGATGATTCTGAAGCTGCCAGTAGTGGGCCAGATCCTGCACAACTCCGCCGTCGCCCGCTTCTCGCGCACGCTGGCGG
TGACCTTCAAGGCGGGCGTGCCACTGGTGGAGGCACTGGACATCGTCGCCGGCGCGACCGGCAACGTGGTTTACGAAGAC
GCGGTGCGCAACATCCGCGACGACGTTTCGGTCGGCTACCCGGTCAACATGGCGATGAAGCAGGTCAACGTGTTCCCGCA
CATGGTCGTGCAGATGACCGCCATCGGTGAAGAAGCCGGTGCGCTGGACACCATGCTGTTCAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCAACAACGCGGTGGACGCGCTGTCGAGCCTGCTGGAGCCGATGATCATGGTGTTCCTCGGCGTGGTCGTC
GGCGGCATGGTGGTGGCCATGTACCTGCCTATCTTCAAGCTCGGCGCGGTCGTGGGCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	55.668	94.749	0.527
pilC	Legionella pneumophila strain ERS1305867	55.808	94.511	0.527
pilC	Acinetobacter baumannii D1279779	52.334	97.136	0.508
pilC	Acinetobacter baylyi ADP1	51.597	97.136	0.501
pilG	Neisseria gonorrhoeae MS11	45.75	95.465	0.437
pilG	Neisseria meningitidis 44/76-A	45.5	95.465	0.434
pilC	Vibrio cholerae strain A1552	40.678	98.568	0.401
pilC	Thermus thermophilus HB27	40.447	96.181	0.389
pilC	Vibrio campbellii strain DS40M4	40.806	94.749	0.387