Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AADC60_RS20110 Genome accession   NZ_CP151651
Coordinates   3993693..3995375 (-) Length   560 a.a.
NCBI ID   WP_009332888.1    Uniprot ID   -
Organism   Cytobacillus pseudoceanisediminis strain GXU-Z9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3988693..4000375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADC60_RS20090 (AADC60_20090) - 3990537..3990773 (+) 237 WP_034296536.1 DUF2627 domain-containing protein -
  AADC60_RS20095 (AADC60_20095) - 3990793..3990933 (+) 141 WP_009332885.1 YycC family protein -
  AADC60_RS20100 (AADC60_20100) spo0A 3991065..3991853 (-) 789 WP_009332886.1 sporulation transcription factor Spo0A -
  AADC60_RS20105 (AADC60_20105) spoIVB 3992221..3993510 (-) 1290 WP_009332887.1 SpoIVB peptidase -
  AADC60_RS20110 (AADC60_20110) recN 3993693..3995375 (-) 1683 WP_009332888.1 DNA repair protein RecN Machinery gene
  AADC60_RS20115 (AADC60_20115) argR 3995850..3996299 (-) 450 WP_009332889.1 transcriptional regulator ArgR -
  AADC60_RS20120 (AADC60_20120) - 3996568..3997410 (-) 843 WP_009332890.1 TlyA family RNA methyltransferase -
  AADC60_RS20125 (AADC60_20125) dxs 3997414..3999306 (-) 1893 WP_009332891.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63287.38 Da        Isoelectric Point: 5.1594

>NTDB_id=979564 AADC60_RS20110 WP_009332888.1 3993693..3995375(-) (recN) [Cytobacillus pseudoceanisediminis strain GXU-Z9]
MLNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAEIEGLFILDDLKHPCYKR
SAEFGIEIEDGMIVLRRDISKTGKSVCRVNGKLVTISVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKLSAAL
TEYQDIYRLYENTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSLQSGYNALQG
EQKGLDWIGMVMGYMNDAAELDPAYKEIAENVANSFYLLEDAARSLRNEMDFMEYDPQRLNEIESRLNEINGLKRKYGKT
VEEVLEYAAQIEEEIETLLNKETHIDKLQKEVAALKKDLLVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDSEVFLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAMADTHLFIAKNTKDGRTKTTVKPLTEDEKIKEIGRMISGVEITDLTKEHAKELLHLANQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=979564 AADC60_RS20110 WP_009332888.1 3993693..3995375(-) (recN) [Cytobacillus pseudoceanisediminis strain GXU-Z9]
TTGTTAAACGAAATATCCATACGAAATTTTGCCATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCGGGAAAGTCCATCATTATCGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAAT
TTGTCCGCCATGGTGAGGATAAGGCTGAAATTGAGGGGCTTTTTATCCTGGATGATCTTAAACATCCTTGCTATAAACGG
TCTGCTGAATTTGGGATAGAGATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCGTCTG
CAGAGTGAACGGAAAACTTGTCACTATATCTGTATTGAGAGAAATCGGAAGTTCCCTTATTGATATACATGGCCAGCACG
AACATCAGGAATTAATGGATGAAACCTTTCATCTTCCTCTCCTCGATCAGTTTGGGGGATCCAAATTATCCGCTGCTTTA
ACTGAATACCAGGATATCTACAGGTTATATGAAAACACACTGAAAAAGCTTAAAAATTTAAGTGAGAATGAACAGCAAAT
GGCGCACCGGCTTGATTTAATTCAATTTCAGCTGGATGAAATTCAATCTGCTCAGCTTAAATTGAACGAAGATGAAGATT
TGATTGAAGAAAAAAGAAAGCTTTCCAATTTTGAACGTATTTTTGATTCTCTTCAGTCAGGCTATAATGCCCTTCAAGGA
GAACAAAAAGGGCTTGATTGGATCGGAATGGTTATGGGCTATATGAATGATGCCGCGGAACTGGACCCCGCCTATAAAGA
AATAGCGGAAAATGTGGCAAACAGTTTTTATTTGCTTGAAGATGCAGCGAGATCACTCCGCAATGAAATGGACTTTATGG
AATATGATCCCCAAAGACTTAATGAGATAGAAAGCAGATTGAATGAAATTAATGGGTTGAAAAGAAAATATGGAAAAACG
GTTGAAGAAGTGCTGGAATACGCTGCACAGATAGAAGAAGAAATTGAAACCCTGCTAAATAAAGAAACCCATATTGATAA
GCTGCAAAAGGAAGTTGCTGCCCTGAAAAAAGACCTTCTGGTTGAAGGAGAAGAATTGAGCAAGCTGCGCAGAAAATCTG
CCCTTAAACTTACCAAGTTAATTCACAAAGAGCTTAAGGAATTATATATGGAAAAGACAGTCTTTGAGGTCAGATTCTTT
TCTGATTCCGAAGTCTTCCTGAAAAACGGAATTGACAGGGCTGAGTTCTACATTTCCACCAATCCGGGAGAACCGCTTAA
GCCGCTGTCTAAAATTGCATCAGGCGGTGAATTGTCCCGAATCATGCTTGCTTTAAAGAGCATATTTTCAAAGCATCAGG
GTGTCACAAGTATTATTTTCGATGAGGTGGATACAGGCGTGAGCGGCAGGGTTGCACAAGCCATCGCGGAAAAGATTCAT
CACGTTTCCGTGGATTCACAGGTTCTGTGCATCTCTCATCTTCCTCAGGTTGCGGCCATGGCAGATACTCATTTATTTAT
TGCTAAAAACACAAAGGATGGGCGGACAAAAACAACAGTAAAACCGCTCACTGAAGATGAGAAAATCAAAGAAATCGGCC
GTATGATTTCCGGGGTGGAAATTACTGATTTAACAAAAGAGCATGCGAAAGAGCTGCTGCACCTGGCTAATCAGCTAAAG
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.066

100

0.646

Multiple sequence alignment