Detailed information NTG0979565

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACNHKU_RS05210
• Genome accession: NZ_CP182142
• Coordinates: 1053250..1054524 (+)
• Length: 424 a.a.
• NCBI ID: WP_094337319.1
• Uniprot ID: -
• Organism: Escherichia coli strain CUPF09
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1048250..1059524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNHKU_RS05190 (ACNHKU_05190)	yajG	1049413..1049991 (-)	579	WP_001295326.1	lipoprotein	-
ACNHKU_RS05195 (ACNHKU_05195)	bolA	1050296..1050613 (+)	318	WP_000973448.1	transcriptional regulator BolA	-
ACNHKU_RS05200 (ACNHKU_05200)	tig	1050957..1052255 (+)	1299	WP_001198386.1	trigger factor	-
ACNHKU_RS05205 (ACNHKU_05205)	clpP	1052501..1053124 (+)	624	WP_000122253.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACNHKU_RS05210 (ACNHKU_05210)	clpX	1053250..1054524 (+)	1275	WP_094337319.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACNHKU_RS05215 (ACNHKU_05215)	lon	1054712..1057066 (+)	2355	WP_001295325.1	endopeptidase La	-
ACNHKU_RS05220 (ACNHKU_05220)	hupB	1057275..1057547 (+)	273	WP_001043542.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46345.97 Da
• Isoelectric Point: 4.9982

>NTDB_id=979565 ACNHKU_RS05210 WP_094337319.1 1053250..1054524(+) (clpX) [Escherichia coli strain CUPF09]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKSEAQQASGE

Nucleotide

• Length: 1275 bp

>NTDB_id=979565 ACNHKU_RS05210 WP_094337319.1 1053250..1054524(+) (clpX) [Escherichia coli strain CUPF09]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGC
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCATTACAAACGTCTGCGCAACGGCGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCTGAAACGCTGGCGC
GCCTGCTGGATGTTCCGTTCACCATGGCCGACGCGACTACACTGACCGAAGCCGGTTATGTGGGTGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAATGCGACTACGATGTCCAGAAAGCACAGCGTGGTATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCACCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATTTGTGGCGGTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCATCGTGTAGAAACCGGCTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTGATCCCTGAGTTCATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGTCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (112-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.85	94.575	0.566
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.392	96.226	0.533