Detailed information NTG0097877

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: R8613_RS07335
• Genome accession: NZ_AP026919
• Coordinates: 1417507..1417977 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609608.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700012
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1414899..1417197	1417507..1417977	flank	310

Gene organization within MGE regions

Location: 1414899..1417977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8613_RS07320 (PC0012_14300)	-	1414899..1416155 (+)	1257	WP_317648101.1	ISL3 family transposase	-
R8613_RS07325	-	1416383..1417197 (-)	815	Protein_1456	IS5-like element IS1515 family transposase	-
R8613_RS07330 (PC0012_14330)	rpsR	1417236..1417475 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
R8613_RS07335 (PC0012_14340)	ssbA	1417507..1417977 (-)	471	WP_000609608.1	single-stranded DNA-binding protein SsbA	Machinery gene

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17341.18 Da
• Isoelectric Point: 5.2065

>NTDB_id=97877 R8613_RS07335 WP_000609608.1 1417507..1417977(-) (ssbA) [Streptococcus pneumoniae strain PZ900700012]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSASTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=97877 R8613_RS07335 WP_000609608.1 1417507..1417977(-) (ssbA) [Streptococcus pneumoniae strain PZ900700012]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCATCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	53.409	100	0.603
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis SK321	52.294	69.872	0.365
ssbB/cilA	Streptococcus mitis NCTC 12261	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365