Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AADV58_RS04580 Genome accession   NZ_CP151406
Coordinates   944147..945379 (-) Length   410 a.a.
NCBI ID   WP_028994943.1    Uniprot ID   -
Organism   Azonexus hydrophilus strain NCP973     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 939147..950379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV58_RS04545 (AADV58_04545) nudB 939352..939816 (-) 465 WP_028994936.1 dihydroneopterin triphosphate diphosphatase -
  AADV58_RS04550 (AADV58_04550) - 939816..940181 (-) 366 WP_051295366.1 barstar family protein -
  AADV58_RS04555 (AADV58_04555) - 940178..940540 (-) 363 WP_341744185.1 ribonuclease domain-containing protein -
  AADV58_RS04560 (AADV58_04560) aspS 940544..942343 (-) 1800 WP_028994939.1 aspartate--tRNA ligase -
  AADV58_RS04565 (AADV58_04565) - 942363..942977 (-) 615 WP_028994940.1 DUF502 domain-containing protein -
  AADV58_RS04570 (AADV58_04570) - 942977..943228 (-) 252 WP_028994941.1 zinc ribbon domain-containing protein -
  AADV58_RS04575 (AADV58_04575) pilD 943299..944147 (-) 849 WP_281985530.1 A24 family peptidase Machinery gene
  AADV58_RS04580 (AADV58_04580) pilC 944147..945379 (-) 1233 WP_028994943.1 type II secretion system F family protein Machinery gene
  AADV58_RS04585 (AADV58_04585) pilB 945393..947108 (-) 1716 WP_028994944.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AADV58_RS04590 (AADV58_04590) - 947153..948460 (-) 1308 WP_051295367.1 HlyC/CorC family transporter -
  AADV58_RS04595 (AADV58_04595) ccsA 948462..949301 (-) 840 WP_028994945.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44832.72 Da        Isoelectric Point: 10.0405

>NTDB_id=976443 AADV58_RS04580 WP_028994943.1 944147..945379(-) (pilC) [Azonexus hydrophilus strain NCP973]
MASLAKTKTSAVKESTFQWEGRNKDGKIVRGELRAATETVVQNTLRRQGITNAKIKKLRFKSGGSVSDKDITLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKSDVETGSSLSQAFRKYPLYFDALFCNLISAGEQAGILDSLLDRLATYK
EKILAIKSKIKKALFYPIAIIIVAFVITAVIMIFVIPAFKELFTSFGADLPLPTLVVMTISDFFVAWWWAIFGAIGGGIY
AFLQSWRRSEKIQMIMDRLLLRLPIFGELVRKSIIARWTRTLSTMFAAGVPLVESLESVGGAAGNHVYRQATRQIQGEVS
TGTSLTVAMQNANIFPNMVTQMVAIGEESGALDSMLSKVADFFEQEVDDSVEALSSLMEPIIMVVLGTLIGGMVVAMYLP
IFKMGAVVGG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=976443 AADV58_RS04580 WP_028994943.1 944147..945379(-) (pilC) [Azonexus hydrophilus strain NCP973]
ATGGCAAGCCTAGCGAAAACAAAGACATCTGCCGTCAAGGAAAGCACGTTTCAGTGGGAGGGTCGCAACAAAGACGGAAA
AATCGTTCGCGGTGAATTGCGCGCCGCCACCGAAACCGTCGTCCAGAACACTTTGCGTCGCCAGGGCATCACCAATGCCA
AGATCAAGAAACTGCGTTTCAAATCGGGCGGTAGCGTCTCAGACAAGGACATCACGCTGTTCACCCGGCAACTTGCCACG
ATGATGAAATCCGGCGTTCCCCTGCTTCAGTCCTTCGACATCGTCGGACGCGGCCACTCCAACCCGGCCGTCGGCAAACT
GCTGCTCGACATCAAGTCCGACGTCGAGACCGGCAGCTCACTATCCCAGGCATTCCGCAAATACCCGCTGTACTTCGACG
CGCTGTTCTGCAACCTGATTTCCGCCGGCGAACAAGCCGGTATTCTCGACTCGCTGCTCGACCGCCTGGCCACATACAAG
GAAAAGATCCTGGCGATCAAGAGCAAGATCAAGAAAGCATTGTTCTACCCGATCGCCATTATTATCGTTGCCTTCGTCAT
CACCGCCGTGATCATGATTTTCGTGATTCCAGCTTTCAAAGAGCTGTTCACCAGCTTTGGTGCCGATCTACCACTCCCGA
CCCTGGTGGTCATGACCATCTCGGATTTCTTCGTTGCCTGGTGGTGGGCCATCTTTGGCGCCATTGGCGGCGGCATCTAT
GCCTTCCTGCAAAGCTGGCGGCGTTCTGAAAAAATCCAGATGATCATGGACAGACTGCTGCTGCGCCTGCCTATTTTTGG
CGAGCTCGTCCGTAAATCAATCATCGCACGGTGGACGCGGACTCTATCTACCATGTTTGCGGCAGGCGTACCCTTGGTCG
AATCACTGGAGTCCGTTGGCGGCGCCGCCGGTAATCATGTTTACAGACAGGCGACACGTCAGATTCAGGGAGAGGTTTCA
ACTGGCACCAGCCTAACTGTCGCCATGCAGAATGCCAACATCTTCCCCAACATGGTCACCCAGATGGTCGCTATCGGCGA
AGAATCAGGCGCGCTCGACTCAATGCTCTCAAAAGTTGCTGACTTTTTCGAACAGGAGGTTGATGACTCCGTAGAAGCTT
TATCAAGCTTGATGGAGCCAATCATCATGGTCGTCCTGGGCACCTTGATTGGCGGCATGGTTGTTGCCATGTATCTACCG
ATCTTCAAGATGGGCGCGGTGGTCGGCGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.149

96.829

0.515
  pilC Acinetobacter baylyi ADP1

51.463

100

0.515
  pilC Pseudomonas stutzeri DSM 10701

52.618

97.805

0.515
  pilG Neisseria gonorrhoeae MS11

52.632

97.317

0.512
  pilC Acinetobacter baumannii D1279779

52.25

97.561

0.51
  pilG Neisseria meningitidis 44/76-A

52

97.561

0.507
  pilC Vibrio campbellii strain DS40M4

39.806

100

0.4
  pilC Vibrio cholerae strain A1552

39.706

99.512

0.395

Multiple sequence alignment