Detailed information NTG0976442

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AADV58_RS04575
• Genome accession: NZ_CP151406
• Coordinates: 943299..944147 (-)
• Length: 282 a.a.
• NCBI ID: WP_281985530.1
• Uniprot ID: -
• Organism: Azonexus hydrophilus strain NCP973
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 938299..949147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADV58_RS04540 (AADV58_04540)	argB	938416..939303 (-)	888	WP_028994935.1	acetylglutamate kinase	-
AADV58_RS04545 (AADV58_04545)	nudB	939352..939816 (-)	465	WP_028994936.1	dihydroneopterin triphosphate diphosphatase	-
AADV58_RS04550 (AADV58_04550)	-	939816..940181 (-)	366	WP_051295366.1	barstar family protein	-
AADV58_RS04555 (AADV58_04555)	-	940178..940540 (-)	363	WP_341744185.1	ribonuclease domain-containing protein	-
AADV58_RS04560 (AADV58_04560)	aspS	940544..942343 (-)	1800	WP_028994939.1	aspartate--tRNA ligase	-
AADV58_RS04565 (AADV58_04565)	-	942363..942977 (-)	615	WP_028994940.1	DUF502 domain-containing protein	-
AADV58_RS04570 (AADV58_04570)	-	942977..943228 (-)	252	WP_028994941.1	zinc ribbon domain-containing protein	-
AADV58_RS04575 (AADV58_04575)	pilD	943299..944147 (-)	849	WP_281985530.1	A24 family peptidase	Machinery gene
AADV58_RS04580 (AADV58_04580)	pilC	944147..945379 (-)	1233	WP_028994943.1	type II secretion system F family protein	Machinery gene
AADV58_RS04585 (AADV58_04585)	pilB	945393..947108 (-)	1716	WP_028994944.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AADV58_RS04590 (AADV58_04590)	-	947153..948460 (-)	1308	WP_051295367.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 30270.82 Da
• Isoelectric Point: 6.9986

>NTDB_id=976442 AADV58_RS04575 WP_281985530.1 943299..944147(-) (pilD) [Azonexus hydrophilus strain NCP973]
MPETLGGLVLAAGLLGLCIGSFLNVVIHRLPRMMESDWQRQCAELRGEAVDAAEAFNLAHPRSRCPHCGHRISALENIPL
LSYLLILRGKCSGCSAPISLRYPLVEALTGALSAYAVWHFGYTAAAVGALLLVWALIALTFIDFDTQLLPDSITLPLLWL
GLAFNLAGTYTTIDQAVIGAMAGYLVLWSIFWLFKLATGKEGMGYGDFKLLAALGAWLGWQSLPAVILLSSLVGAIVGIC
LIVLARHGRNVPIPFGPYLAAAGLIALFWGQTLTESYLGIAY

Nucleotide

• Length: 849 bp

>NTDB_id=976442 AADV58_RS04575 WP_281985530.1 943299..944147(-) (pilD) [Azonexus hydrophilus strain NCP973]
ATGCCGGAAACCCTGGGCGGGCTCGTGCTCGCAGCCGGCCTGCTGGGACTGTGCATCGGCAGTTTCCTGAACGTGGTCAT
CCATCGCCTGCCCAGGATGATGGAAAGCGACTGGCAACGCCAATGCGCAGAATTGCGGGGCGAGGCCGTCGATGCCGCAG
AGGCCTTTAATCTCGCGCACCCCCGTTCTCGTTGCCCACATTGCGGCCATCGGATCAGTGCGCTGGAAAATATCCCCCTA
CTCAGTTACCTGCTGATCCTGCGTGGCAAATGCTCCGGCTGCTCAGCCCCGATATCGCTGCGCTACCCGCTGGTGGAGGC
GCTGACCGGCGCGCTGTCCGCCTACGCGGTCTGGCACTTCGGTTACACAGCTGCCGCTGTCGGCGCACTGCTACTGGTCT
GGGCGCTGATCGCACTGACCTTCATCGATTTCGACACGCAACTGCTGCCGGACAGCATTACCCTGCCCCTGCTCTGGCTC
GGCCTGGCATTCAATCTGGCCGGCACTTACACCACCATCGATCAGGCGGTCATCGGCGCAATGGCGGGCTATCTCGTCCT
GTGGAGCATTTTCTGGCTGTTCAAGCTGGCGACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAACTGCTGGCCGCAC
TCGGCGCCTGGCTGGGCTGGCAATCGCTGCCAGCGGTCATCCTGCTTTCATCGCTGGTCGGCGCCATCGTCGGCATCTGC
CTGATCGTGCTCGCCCGACACGGTCGCAACGTCCCCATCCCCTTCGGCCCCTACCTGGCCGCGGCAGGACTGATCGCCCT
TTTCTGGGGGCAAACGCTGACGGAAAGCTATCTCGGCATTGCCTATTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (130-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.667	95.745	0.543
pilD	Vibrio campbellii strain DS40M4	54.38	97.163	0.528
pilD	Acinetobacter nosocomialis M2	53.047	98.936	0.525
pilD	Acinetobacter baumannii D1279779	52.33	98.936	0.518
pilD	Neisseria gonorrhoeae MS11	51.562	90.78	0.468