Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | WMB06_RS20190 | Genome accession | NZ_CP151275 |
| Coordinates | 4436939..4438177 (+) | Length | 412 a.a. |
| NCBI ID | WP_341676344.1 | Uniprot ID | - |
| Organism | Niveibacterium sp. SC-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4431939..4443177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WMB06_RS20175 (WMB06_20175) | ccsA | 4432973..4433788 (+) | 816 | WP_341676341.1 | cytochrome c biogenesis protein CcsA | - |
| WMB06_RS20180 (WMB06_20180) | - | 4433843..4435114 (+) | 1272 | WP_341676342.1 | CNNM domain-containing protein | - |
| WMB06_RS20185 (WMB06_20185) | pilB | 4435204..4436922 (+) | 1719 | WP_341676343.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| WMB06_RS20190 (WMB06_20190) | pilC | 4436939..4438177 (+) | 1239 | WP_341676344.1 | type II secretion system F family protein | Machinery gene |
| WMB06_RS20195 (WMB06_20195) | pilD | 4438229..4439080 (+) | 852 | WP_341676345.1 | A24 family peptidase | Machinery gene |
| WMB06_RS20200 (WMB06_20200) | - | 4439179..4439454 (+) | 276 | WP_341676346.1 | zinc ribbon domain-containing protein | - |
| WMB06_RS20205 (WMB06_20205) | - | 4439475..4440104 (+) | 630 | WP_341676347.1 | DUF502 domain-containing protein | - |
| WMB06_RS20210 (WMB06_20210) | aspS | 4440394..4442187 (+) | 1794 | WP_341676348.1 | aspartate--tRNA ligase | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 44327.77 Da Isoelectric Point: 10.2936
>NTDB_id=976059 WMB06_RS20190 WP_341676344.1 4436939..4438177(+) (pilC) [Niveibacterium sp. SC-1]
MATTTARATRKPATGSEESVFVWEGRDKQGKVVRGETRAGSASIVQANLRRQGISGAKVKKRSFSRGGKISGKDIAIFTR
QLATMLKSGVPLLQAFDIAIKGSSNPAVARLLNEIRTDVESGSSLAQAFRKHPVHFDNLYANLVGAGEQSGALDALLDRL
ATYKEKILAIKSKIKGALFYPIAVVAVALGVVTVMMLFVIPQFKSVFSNFGAELPAPTQLVVAMSDAFLAYWYLIFGGLA
AIIVGLTMAYRRSPQMQFTLDRLILQFPVIGDIIRKATVARWTRTLSTMFAAGVPLVESLDSVGGAAGNRVYQLATKQIQ
NEVSTGTSLTVAMQNANVFPTMVLQMVSIGEESGQLDSMLSKVADFFEREVDDAVDALSQLLEPLIIVFLGTVVGGLVVA
MYLPIFKLGQVV
MATTTARATRKPATGSEESVFVWEGRDKQGKVVRGETRAGSASIVQANLRRQGISGAKVKKRSFSRGGKISGKDIAIFTR
QLATMLKSGVPLLQAFDIAIKGSSNPAVARLLNEIRTDVESGSSLAQAFRKHPVHFDNLYANLVGAGEQSGALDALLDRL
ATYKEKILAIKSKIKGALFYPIAVVAVALGVVTVMMLFVIPQFKSVFSNFGAELPAPTQLVVAMSDAFLAYWYLIFGGLA
AIIVGLTMAYRRSPQMQFTLDRLILQFPVIGDIIRKATVARWTRTLSTMFAAGVPLVESLDSVGGAAGNRVYQLATKQIQ
NEVSTGTSLTVAMQNANVFPTMVLQMVSIGEESGQLDSMLSKVADFFEREVDDAVDALSQLLEPLIIVFLGTVVGGLVVA
MYLPIFKLGQVV
Nucleotide
Download Length: 1239 bp
>NTDB_id=976059 WMB06_RS20190 WP_341676344.1 4436939..4438177(+) (pilC) [Niveibacterium sp. SC-1]
ATGGCCACGACCACCGCAAGAGCGACCCGCAAGCCAGCCACCGGCTCCGAGGAAAGTGTCTTCGTCTGGGAAGGACGCGA
CAAACAGGGCAAGGTAGTCCGCGGGGAAACACGTGCCGGCAGTGCGTCCATCGTCCAGGCCAATCTGCGTCGGCAGGGCA
TCAGCGGCGCCAAGGTCAAAAAGCGTAGCTTCTCGCGCGGCGGCAAGATCAGCGGAAAGGACATCGCGATCTTCACTCGA
CAGCTCGCGACCATGCTCAAATCAGGCGTGCCTCTGCTGCAGGCCTTCGATATCGCGATCAAGGGCTCTTCCAATCCTGC
AGTGGCGCGATTGCTCAATGAGATTCGAACCGACGTGGAAAGTGGCAGCAGCCTCGCTCAGGCATTCCGCAAACACCCGG
TCCATTTCGACAATCTCTACGCCAATTTGGTAGGAGCCGGCGAGCAATCTGGCGCATTGGATGCGCTGCTGGACCGCCTC
GCCACCTACAAAGAAAAGATCCTTGCGATTAAAAGCAAGATAAAGGGGGCGCTGTTCTATCCAATCGCCGTCGTTGCCGT
CGCGCTAGGCGTCGTGACGGTAATGATGTTGTTCGTGATTCCGCAGTTCAAGTCTGTTTTCAGCAACTTTGGGGCAGAAC
TGCCGGCGCCCACCCAGCTCGTGGTCGCGATGTCAGACGCTTTCCTAGCCTATTGGTACCTTATTTTTGGCGGATTGGCG
GCCATCATCGTCGGCCTCACGATGGCCTACAGGCGCTCCCCTCAAATGCAATTCACCCTGGACCGTTTGATTCTCCAGTT
CCCCGTCATTGGCGACATCATCCGCAAGGCCACGGTCGCGCGCTGGACGCGTACCTTGTCTACCATGTTCGCGGCCGGCG
TGCCTCTGGTGGAATCGCTGGACTCAGTGGGTGGCGCTGCTGGCAACCGGGTTTACCAACTGGCCACGAAGCAGATCCAG
AATGAGGTGAGTACCGGTACCAGCCTCACCGTCGCCATGCAGAACGCCAACGTCTTTCCGACCATGGTCCTGCAGATGGT
CTCCATCGGCGAGGAGTCGGGCCAGCTGGACTCCATGCTGAGCAAGGTCGCGGACTTTTTTGAACGCGAAGTCGACGACG
CGGTGGACGCGCTCTCGCAACTGCTTGAGCCGCTGATCATCGTTTTCCTGGGTACCGTAGTCGGTGGCCTCGTGGTGGCC
ATGTACCTGCCGATCTTCAAGCTCGGCCAGGTCGTCTGA
ATGGCCACGACCACCGCAAGAGCGACCCGCAAGCCAGCCACCGGCTCCGAGGAAAGTGTCTTCGTCTGGGAAGGACGCGA
CAAACAGGGCAAGGTAGTCCGCGGGGAAACACGTGCCGGCAGTGCGTCCATCGTCCAGGCCAATCTGCGTCGGCAGGGCA
TCAGCGGCGCCAAGGTCAAAAAGCGTAGCTTCTCGCGCGGCGGCAAGATCAGCGGAAAGGACATCGCGATCTTCACTCGA
CAGCTCGCGACCATGCTCAAATCAGGCGTGCCTCTGCTGCAGGCCTTCGATATCGCGATCAAGGGCTCTTCCAATCCTGC
AGTGGCGCGATTGCTCAATGAGATTCGAACCGACGTGGAAAGTGGCAGCAGCCTCGCTCAGGCATTCCGCAAACACCCGG
TCCATTTCGACAATCTCTACGCCAATTTGGTAGGAGCCGGCGAGCAATCTGGCGCATTGGATGCGCTGCTGGACCGCCTC
GCCACCTACAAAGAAAAGATCCTTGCGATTAAAAGCAAGATAAAGGGGGCGCTGTTCTATCCAATCGCCGTCGTTGCCGT
CGCGCTAGGCGTCGTGACGGTAATGATGTTGTTCGTGATTCCGCAGTTCAAGTCTGTTTTCAGCAACTTTGGGGCAGAAC
TGCCGGCGCCCACCCAGCTCGTGGTCGCGATGTCAGACGCTTTCCTAGCCTATTGGTACCTTATTTTTGGCGGATTGGCG
GCCATCATCGTCGGCCTCACGATGGCCTACAGGCGCTCCCCTCAAATGCAATTCACCCTGGACCGTTTGATTCTCCAGTT
CCCCGTCATTGGCGACATCATCCGCAAGGCCACGGTCGCGCGCTGGACGCGTACCTTGTCTACCATGTTCGCGGCCGGCG
TGCCTCTGGTGGAATCGCTGGACTCAGTGGGTGGCGCTGCTGGCAACCGGGTTTACCAACTGGCCACGAAGCAGATCCAG
AATGAGGTGAGTACCGGTACCAGCCTCACCGTCGCCATGCAGAACGCCAACGTCTTTCCGACCATGGTCCTGCAGATGGT
CTCCATCGGCGAGGAGTCGGGCCAGCTGGACTCCATGCTGAGCAAGGTCGCGGACTTTTTTGAACGCGAAGTCGACGACG
CGGTGGACGCGCTCTCGCAACTGCTTGAGCCGCTGATCATCGTTTTCCTGGGTACCGTAGTCGGTGGCCTCGTGGTGGCC
ATGTACCTGCCGATCTTCAAGCTCGGCCAGGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
54.545 |
96.117 |
0.524 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.133 |
96.845 |
0.515 |
| pilG | Neisseria gonorrhoeae MS11 |
50.882 |
96.359 |
0.49 |
| pilG | Neisseria meningitidis 44/76-A |
50.378 |
96.359 |
0.485 |
| pilC | Acinetobacter baylyi ADP1 |
49.246 |
96.602 |
0.476 |
| pilC | Acinetobacter baumannii D1279779 |
48.111 |
96.359 |
0.464 |
| pilC | Vibrio cholerae strain A1552 |
46.465 |
96.117 |
0.447 |
| pilC | Vibrio campbellii strain DS40M4 |
43.325 |
96.359 |
0.417 |
| pilC | Thermus thermophilus HB27 |
39.808 |
100 |
0.403 |