Detailed information NTG0097523

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8474_RS09615
• Genome accession: NZ_AP026914
• Coordinates: 1882617..1883021 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588030.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700003
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1877617..1888021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8474_RS09575 (PC0003_18710)	rnpA	1878033..1878404 (-)	372	WP_000739244.1	ribonuclease P protein component	-
R8474_RS09580	-	1878421..1878552 (-)	132	WP_000768904.1	hypothetical protein	-
R8474_RS09585 (PC0003_18720)	-	1878553..1879743 (-)	1191	WP_000167769.1	acetate kinase	-
R8474_RS09590 (PC0003_18730)	comYH	1879794..1880747 (-)	954	WP_000345127.1	class I SAM-dependent methyltransferase	Machinery gene
R8474_RS09595	-	1880808..1881402 (-)	595	Protein_1869	class I SAM-dependent methyltransferase	-
R8474_RS09600 (PC0003_18760)	comGG/cglG	1881558..1881950 (-)	393	WP_001818028.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8474_RS09605	comGF/cglF	1881928..1882389 (-)	462	WP_000250539.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8474_RS09610 (PC0003_18780)	comGE/cglE	1882352..1882654 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8474_RS09615 (PC0003_18790)	comGD/cglD	1882617..1883021 (-)	405	WP_000588030.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8474_RS09620 (PC0003_18800)	comGC/cglC	1883014..1883340 (-)	327	WP_000738625.1	competence type IV pilus major pilin ComGC	Machinery gene
R8474_RS09625 (PC0003_18810)	comGB/cglB	1883342..1884358 (-)	1017	WP_074017570.1	competence type IV pilus assembly protein ComGB	Machinery gene
R8474_RS09630 (PC0003_18820)	comGA/cglA/cilD	1884306..1885247 (-)	942	WP_000249549.1	competence type IV pilus ATPase ComGA	Machinery gene
R8474_RS09635 (PC0003_18830)	-	1885323..1885688 (-)	366	WP_000286415.1	DUF1033 family protein	-
R8474_RS09640 (PC0003_18840)	-	1885839..1886897 (-)	1059	WP_000649466.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=97523 R8474_RS09615 WP_000588030.1 1882617..1883021(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700003]
MIKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=97523 R8474_RS09615 WP_000588030.1 1882617..1883021(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700003]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTATCCAGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	48.438	95.522	0.463
comYD	Streptococcus mutans UA159	48.438	95.522	0.463