Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AABM52_RS26345 Genome accession   NZ_CP150919
Coordinates   5875355..5876572 (+) Length   405 a.a.
NCBI ID   WP_347909112.1    Uniprot ID   -
Organism   Pseudomonas grandcourensis strain DGS24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5870355..5881572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM52_RS26325 - 5870609..5873599 (+) 2991 WP_347909103.1 DUF748 domain-containing protein -
  AABM52_RS26330 - 5873599..5873892 (+) 294 WP_347909105.1 DUF2845 domain-containing protein -
  AABM52_RS26335 - 5874051..5874407 (-) 357 WP_347909107.1 BON domain-containing protein -
  AABM52_RS26340 - 5874708..5875127 (-) 420 WP_347909110.1 pilin -
  AABM52_RS26345 pilC 5875355..5876572 (+) 1218 WP_347909112.1 type II secretion system F family protein Machinery gene
  AABM52_RS26350 pilD 5876574..5877446 (+) 873 WP_347909114.1 A24 family peptidase Machinery gene
  AABM52_RS26355 coaE 5877443..5878066 (+) 624 WP_347909116.1 dephospho-CoA kinase -
  AABM52_RS26360 yacG 5878063..5878263 (+) 201 WP_007970539.1 DNA gyrase inhibitor YacG -
  AABM52_RS26365 - 5878299..5878988 (-) 690 WP_347909118.1 energy-coupling factor ABC transporter permease -
  AABM52_RS26370 - 5879060..5879992 (-) 933 WP_347909119.1 LysR family transcriptional regulator -
  AABM52_RS26375 - 5880114..5880356 (+) 243 WP_347909121.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44294.35 Da        Isoelectric Point: 10.4290

>NTDB_id=973810 AABM52_RS26345 WP_347909112.1 5875355..5876572(+) (pilC) [Pseudomonas grandcourensis strain DGS24]
MAVKAAKISVYAWEGIDRKGTKVTGELSAQNPALIKAKLRKQGITPGKVRKKNHSVFNMGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDELKQEVAAGSSFAAALRKKPRYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKARIRKAMTYPLVVVFVAAIVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSQFMQAWWWVVLGALVTMAFGVR
HALRRSPAFRDRMDTWLLKLPLVGTLMHKSAVARFARTLSTTFAAGVPLVEALESVAGATGNVVFKRAVLRIRQDISTGM
QLNFAMRTSGVFPNMAIQMTAIGEESGTLDAMLDKVAGFYEDNVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=973810 AABM52_RS26345 WP_347909112.1 5875355..5876572(+) (pilC) [Pseudomonas grandcourensis strain DGS24]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTGTATGCATGGGAAGGCATCGACCGCAAAGGCACAAAAGTGACCGGCGAACT
CAGCGCTCAAAACCCGGCGCTGATCAAGGCGAAGCTGCGCAAACAGGGCATCACTCCCGGCAAGGTCCGCAAGAAAAACC
ATTCGGTTTTCAACATGGGCAAGCGTATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACAATGATGAAG
GCCGGCGTGCCGTTGTTGCAGTCGTTCGACATCATCGGCGAAGGCTTCGACAACCCGGCCATGCGCAAGCTGGTGGACGA
ACTGAAACAGGAAGTTGCGGCAGGCAGCAGCTTCGCCGCCGCCCTGCGCAAGAAGCCCCGGTATTTCGATGAGCTGTATT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGTGCCCTCGACACCCTTTTGGAGCGGGTCGCGACCTACAAGGAAAAAAGC
GAAAGCCTCAAGGCCAGGATCAGAAAAGCCATGACCTACCCGTTGGTGGTGGTGTTCGTCGCGGCGATCGTCACCGGGAT
TCTGCTGGTCAAAGTCGTGCCGCAGTTCGAGTCGGTGTTCAAAGGCTTTGGTGCCGAACTGCCGGCCTTCACCGTGATGG
TCATTGGCCTGTCGCAATTCATGCAGGCCTGGTGGTGGGTGGTCCTTGGCGCGCTGGTCACGATGGCATTCGGCGTGCGC
CACGCCCTCAGGAGATCCCCGGCCTTCCGTGACCGAATGGACACCTGGCTGCTGAAACTGCCGCTGGTGGGCACCCTGAT
GCACAAGTCCGCCGTGGCCCGGTTCGCCCGTACGCTGTCGACCACTTTCGCTGCCGGTGTACCACTGGTGGAGGCCCTGG
AATCAGTGGCCGGCGCGACCGGCAATGTCGTGTTCAAGCGCGCGGTATTGCGCATCCGGCAGGACATCTCGACCGGCATG
CAATTGAATTTCGCCATGCGCACCAGCGGCGTTTTTCCGAACATGGCGATACAAATGACCGCCATCGGCGAGGAGTCTGG
CACCCTGGACGCTATGCTGGACAAAGTCGCGGGGTTCTACGAAGACAACGTCGATAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGACTGGTAGTTGCCATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

71.605

100

0.716
  pilC Acinetobacter baylyi ADP1

57.843

100

0.583
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilC Vibrio cholerae strain A1552

43.97

98.272

0.432
  pilG Neisseria gonorrhoeae MS11

42.786

99.259

0.425
  pilG Neisseria meningitidis 44/76-A

41.975

100

0.42
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

37.905

99.012

0.375

Multiple sequence alignment