Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABM52_RS26350 Genome accession   NZ_CP150919
Coordinates   5876574..5877446 (+) Length   290 a.a.
NCBI ID   WP_347909114.1    Uniprot ID   -
Organism   Pseudomonas grandcourensis strain DGS24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5871574..5882446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM52_RS26330 - 5873599..5873892 (+) 294 WP_347909105.1 DUF2845 domain-containing protein -
  AABM52_RS26335 - 5874051..5874407 (-) 357 WP_347909107.1 BON domain-containing protein -
  AABM52_RS26340 - 5874708..5875127 (-) 420 WP_347909110.1 pilin -
  AABM52_RS26345 pilC 5875355..5876572 (+) 1218 WP_347909112.1 type II secretion system F family protein Machinery gene
  AABM52_RS26350 pilD 5876574..5877446 (+) 873 WP_347909114.1 A24 family peptidase Machinery gene
  AABM52_RS26355 coaE 5877443..5878066 (+) 624 WP_347909116.1 dephospho-CoA kinase -
  AABM52_RS26360 yacG 5878063..5878263 (+) 201 WP_007970539.1 DNA gyrase inhibitor YacG -
  AABM52_RS26365 - 5878299..5878988 (-) 690 WP_347909118.1 energy-coupling factor ABC transporter permease -
  AABM52_RS26370 - 5879060..5879992 (-) 933 WP_347909119.1 LysR family transcriptional regulator -
  AABM52_RS26375 - 5880114..5880356 (+) 243 WP_347909121.1 DUF2790 domain-containing protein -
  AABM52_RS26380 - 5880366..5881634 (-) 1269 WP_347909123.1 OprD family porin -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32044.23 Da        Isoelectric Point: 7.7490

>NTDB_id=973811 AABM52_RS26350 WP_347909114.1 5876574..5877446(+) (pilD) [Pseudomonas grandcourensis strain DGS24]
MPLNEILTHSALAFVLLAGITGLLVGSFLNVVIWRLPKMLERDWREQAHDILGLPGETPLPTYNLLLPHSQCPHCGHRIR
AWENIPLLSYVFLRGRCSACAAAISPRYPLTELACGLLSAFVAWHFGFGWPAGLMLILSWGLLAMSLIDAEHQILPDILV
LPLIWLGLIVNSFGLFVSLHEALWGAIAGYGLLWSVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGLVLLRWRNAKTSTPIPFGPYLAIAGWIALLWGGQITDLYWQFVGLK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=973811 AABM52_RS26350 WP_347909114.1 5876574..5877446(+) (pilD) [Pseudomonas grandcourensis strain DGS24]
ATGCCCTTGAATGAAATCCTGACTCACTCTGCGCTGGCCTTTGTCCTTCTTGCAGGCATCACCGGCCTGCTGGTCGGCAG
TTTCCTCAATGTCGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCGAGCAGGCCCATGACATTCTCGGGC
TGCCTGGCGAAACGCCGCTGCCGACCTACAACCTGTTGCTGCCCCACTCCCAGTGCCCGCACTGCGGTCACCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATGTGTTTTTGCGCGGCCGCTGTTCAGCCTGCGCGGCAGCGATCAGCCCGCG
CTATCCGTTGACCGAACTGGCCTGCGGCCTGTTGTCGGCGTTTGTTGCCTGGCACTTCGGCTTCGGTTGGCCGGCCGGCC
TGATGCTGATCCTGAGCTGGGGTCTGCTGGCGATGAGCCTCATCGACGCCGAACATCAGATATTGCCGGACATACTGGTG
CTGCCATTGATCTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGTCGTTGCACGAGGCGCTTTGGGGAGCGAT
CGCCGGCTACGGCCTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGACGGCATGGGCTACGGTGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACTATCCTGCTGTCCTCGCTGGTGGGT
GCCATTATCGGGCTGGTGCTACTGCGCTGGCGCAATGCAAAAACCTCGACGCCGATCCCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACCTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.579

94.138

0.514
  pilD Vibrio campbellii strain DS40M4

50.709

97.241

0.493
  pilD Acinetobacter baumannii D1279779

47.842

95.862

0.459
  pilD Acinetobacter nosocomialis M2

47.842

95.862

0.459
  pilD Neisseria gonorrhoeae MS11

51.163

88.966

0.455

Multiple sequence alignment