Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | WMZ02_RS04700 | Genome accession | NZ_CP150864 |
| Coordinates | 1025902..1026186 (+) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain NJIFDCVp7 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1020902..1031186
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WMZ02_RS04690 (WMZ02_04690) | - | 1023420..1023692 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| WMZ02_RS04695 (WMZ02_04695) | ppiD | 1023892..1025751 (+) | 1860 | WP_005495983.1 | peptidylprolyl isomerase | - |
| WMZ02_RS04700 (WMZ02_04700) | comEA | 1025902..1026186 (+) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| WMZ02_RS04705 (WMZ02_04705) | rrtA | 1026277..1026828 (-) | 552 | WP_180765428.1 | rhombosortase | - |
| WMZ02_RS04710 (WMZ02_04710) | - | 1026832..1027446 (+) | 615 | WP_005482520.1 | DTW domain-containing protein | - |
| WMZ02_RS04715 (WMZ02_04715) | - | 1027456..1028790 (-) | 1335 | WP_041954079.1 | anti-phage deoxyguanosine triphosphatase | - |
| WMZ02_RS04720 (WMZ02_04720) | yfbR | 1028803..1029387 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| WMZ02_RS04725 (WMZ02_04725) | - | 1029478..1030692 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=973164 WMZ02_RS04700 WP_021449594.1 1025902..1026186(+) (comEA) [Vibrio parahaemolyticus strain NJIFDCVp7]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=973164 WMZ02_RS04700 WP_021449594.1 1025902..1026186(+) (comEA) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |