Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACK1X7_RS17865 Genome accession   NZ_CP178393
Coordinates   4104265..4104879 (-) Length   204 a.a.
NCBI ID   WP_161561328.1    Uniprot ID   A0A1H4N4Q2
Organism   Streptomyces sp. CY1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4099265..4109879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS17845 (ACK1X7_17795) - 4100090..4101070 (+) 981 WP_385142134.1 hypothetical protein -
  ACK1X7_RS17850 (ACK1X7_17800) - 4101129..4101971 (+) 843 WP_390793197.1 hypothetical protein -
  ACK1X7_RS17855 (ACK1X7_17805) clpX 4102077..4103363 (-) 1287 WP_059145704.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACK1X7_RS17860 (ACK1X7_17810) clpP 4103546..4104202 (-) 657 WP_385142128.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACK1X7_RS17865 (ACK1X7_17815) clpP 4104265..4104879 (-) 615 WP_161561328.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACK1X7_RS17870 (ACK1X7_17820) tig 4105159..4106589 (-) 1431 WP_385142125.1 trigger factor -
  ACK1X7_RS17885 (ACK1X7_17835) - 4107196..4107390 (-) 195 WP_078641423.1 hypothetical protein -
  ACK1X7_RS17890 (ACK1X7_17840) - 4108006..4109190 (+) 1185 WP_390793196.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21612.46 Da        Isoelectric Point: 4.6562

>NTDB_id=971673 ACK1X7_RS17865 WP_161561328.1 4104265..4104879(-) (clpP) [Streptomyces sp. CY1]
MTNTMPSAAGEPTVGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSISAGMAIYDT
MQYIQNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQ
TVEQIVRDSDRDRWFSAQEAKEYGLVDDVMTSASSVPGGGGTGA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=971673 ACK1X7_RS17865 WP_161561328.1 4104265..4104879(-) (clpP) [Streptomyces sp. CY1]
GTGACGAATACGATGCCTTCCGCCGCCGGCGAGCCGACCGTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGG
CGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACGGCTCAGCTTCTTCTGCTCGCCG
CCGATCCGGACAAGGACATCTACCTCTACATCAACTCTCCGGGCGGCTCGATCTCGGCCGGCATGGCGATCTACGACACC
ATGCAGTACATCCAGAACGACGTGGTCACCATCGCGATGGGCCTCGCCGCCTCGATGGGGCAGTTCCTGCTGAGCGCGGG
CACCCCGGGCAAGCGTTTCGCGCTGCCCAATGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCGGGTTCCGCCT
CGGACATCAAGATTCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCTTTCCACACCGGCCAG
ACGGTTGAGCAGATCGTCCGTGACTCCGACCGCGACCGCTGGTTCTCCGCCCAGGAGGCCAAGGAGTACGGCCTGGTCGA
CGACGTCATGACGTCCGCCTCCAGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H4N4Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.684

93.137

0.5
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

93.137

0.48
  clpP Streptococcus mutans UA159

51.323

92.647

0.475
  clpP Lactococcus lactis subsp. cremoris KW2

50.259

94.608

0.475
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.741

94.608

0.471
  clpP Streptococcus thermophilus LMD-9

49.215

93.627

0.461
  clpP Streptococcus thermophilus LMG 18311

49.215

93.627

0.461
  clpP Streptococcus pneumoniae Rx1

48.187

94.608

0.456
  clpP Streptococcus pneumoniae D39

48.187

94.608

0.456
  clpP Streptococcus pneumoniae R6

48.187

94.608

0.456
  clpP Streptococcus pneumoniae TIGR4

48.187

94.608

0.456
  clpP Streptococcus pyogenes JRS4

49.206

92.647

0.456
  clpP Streptococcus pyogenes MGAS315

49.206

92.647

0.456

Multiple sequence alignment