Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACJX2R_RS20005 Genome accession   NZ_CP178360
Coordinates   4764776..4765378 (-) Length   200 a.a.
NCBI ID   WP_171072767.1    Uniprot ID   A0ABP4I082
Organism   Streptomyces sp. Inha503     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4759776..4770378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX2R_RS19985 (ACJX2R_20060) - 4760590..4761582 (+) 993 WP_413101239.1 hypothetical protein -
  ACJX2R_RS19990 (ACJX2R_20065) - 4761641..4762483 (+) 843 WP_413101240.1 hypothetical protein -
  ACJX2R_RS19995 (ACJX2R_20070) clpX 4762590..4763876 (-) 1287 WP_037945935.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACJX2R_RS20000 (ACJX2R_20075) clpP 4764058..4764714 (-) 657 WP_037945933.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACJX2R_RS20005 (ACJX2R_20080) clpP 4764776..4765378 (-) 603 WP_171072767.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACJX2R_RS20010 (ACJX2R_20085) tig 4765670..4767106 (-) 1437 WP_413101241.1 trigger factor -
  ACJX2R_RS20025 (ACJX2R_20100) - 4767722..4767916 (-) 195 WP_413101242.1 hypothetical protein -
  ACJX2R_RS20030 (ACJX2R_20105) - 4768533..4769714 (+) 1182 WP_413101243.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21149.94 Da        Isoelectric Point: 4.5666

>NTDB_id=971409 ACJX2R_RS20005 WP_171072767.1 4764776..4765378(-) (clpP) [Streptomyces sp. Inha503]
MPSAAGEPTVGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPEKDIYLYINSPGGSISAGMAIYDTMQYI
QNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVEQ
IVRDSDRDRWFSADEAKEYGLVDDVMTSASSVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=971409 ACJX2R_RS20005 WP_171072767.1 4764776..4765378(-) (clpP) [Streptomyces sp. Inha503]
ATGCCTTCCGCCGCCGGCGAGCCGACCGTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACGGCTCAGCTGCTCCTGCTCGCCGCCGATCCGGAAA
AGGACATTTACCTCTACATCAACTCCCCGGGCGGCTCGATCTCGGCGGGCATGGCGATTTACGACACCATGCAGTACATC
CAGAACGACGTGGTCACCATCGCCATGGGCCTCGCCGCTTCGATGGGTCAGTTCCTGCTGAGCGCGGGCACCCCGGGCAA
GCGCTTCGCGCTCCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGTCTGGCGGGTTCCGCCTCGGACATCAAGA
TCCATGCCGAGCGCCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCGCCTTCCACACCGGCCAGACGGTTGAGCAG
ATCGTCCGTGACTCCGACCGCGACCGCTGGTTCTCCGCCGACGAGGCCAAGGAGTACGGCCTGGTCGACGACGTCATGAC
GTCCGCCTCCAGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.787

94

0.515
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Lactococcus lactis subsp. cremoris KW2

50.777

96.5

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.259

96.5

0.485
  clpP Streptococcus mutans UA159

50.794

94.5

0.48
  clpP Streptococcus thermophilus LMG 18311

49.215

95.5

0.47
  clpP Streptococcus thermophilus LMD-9

49.215

95.5

0.47
  clpP Streptococcus pyogenes JRS4

49.735

94.5

0.47
  clpP Streptococcus pyogenes MGAS315

49.735

94.5

0.47
  clpP Streptococcus pneumoniae Rx1

48.187

96.5

0.465
  clpP Streptococcus pneumoniae D39

48.187

96.5

0.465
  clpP Streptococcus pneumoniae R6

48.187

96.5

0.465
  clpP Streptococcus pneumoniae TIGR4

48.187

96.5

0.465