Detailed information NTG0970752

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: WJM45_RS16755
• Genome accession: NZ_CP150634
• Coordinates: 4005283..4006503 (-)
• Length: 406 a.a.
• NCBI ID: WP_341326202.1
• Uniprot ID: -
• Organism: Methylotuvimicrobium sp. KM2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4000283..4011503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJM45_RS16745 (WJM45_16745)	-	4001708..4002607 (+)	900	WP_341326200.1	hypothetical protein	-
WJM45_RS16750 (WJM45_16750)	-	4002692..4004503 (+)	1812	WP_341326201.1	hypothetical protein	-
WJM45_RS16755 (WJM45_16755)	pilC	4005283..4006503 (-)	1221	WP_341326202.1	type II secretion system F family protein	Machinery gene
WJM45_RS16760 (WJM45_16760)	pilB	4006506..4008224 (-)	1719	WP_341326203.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WJM45_RS16765 (WJM45_16765)	-	4008333..4011143 (-)	2811	WP_341326204.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44854.79 Da
• Isoelectric Point: 6.8775

>NTDB_id=970752 WJM45_RS16755 WP_341326202.1 4005283..4006503(-) (pilC) [Methylotuvimicrobium sp. KM2]
MSEQVEQIDFIWDGKDKSGKRTKGEIAAKSETVARSELRKMGVRVISVKKKPKPLFGARVKAITPGDIAIFSRQLATMLE
AGVPLVQSFDIIGRGHENPSMQKMLLDIKSDIEGGDTLAEALKRRPVYFDELFCNLVESGEQAGVLETLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFVVTAILLIFVVPVFEELFQSFGADLPAFTKMVISLSEWMQEWWWIMVGSIVAAVYTFS
YFHKRSRPFNHFLDRTLLKIPVVGLILNKSAIARFSRTLSTMSAAGVPLVEALESVAGACGNIIYADAVLKMREDVATGQ
RLQFAMQQTVLFPHMVIQMVAIGEESGSIDTMLSKVADFYEEEVDNLVDNLSSLMEPLIMSVLGVLVGGLIVAMYLPIFK
MGAAVG

Nucleotide

• Length: 1221 bp

>NTDB_id=970752 WJM45_RS16755 WP_341326202.1 4005283..4006503(-) (pilC) [Methylotuvimicrobium sp. KM2]
ATGTCTGAACAAGTCGAACAAATTGATTTCATCTGGGATGGCAAAGACAAAAGCGGGAAGCGCACCAAGGGGGAAATCGC
CGCGAAATCCGAAACCGTTGCGCGGAGCGAATTGCGCAAGATGGGTGTGCGCGTCATTAGTGTCAAGAAAAAACCCAAGC
CCTTGTTCGGCGCGCGTGTCAAAGCCATTACGCCGGGCGATATCGCTATTTTCAGCCGGCAACTCGCGACCATGCTTGAA
GCGGGTGTGCCGTTGGTGCAATCGTTCGATATCATCGGGAGAGGGCATGAAAACCCGAGTATGCAAAAGATGTTGCTAGA
CATCAAGTCAGATATCGAAGGCGGCGATACCTTGGCCGAAGCGCTGAAAAGAAGACCTGTTTATTTTGATGAGCTTTTTT
GTAATCTGGTCGAATCTGGCGAACAGGCCGGGGTGCTTGAGACATTGCTCGATAAAATTGCGACCTATAAAGAAAAAACC
GAATCGCTCAAGAAAAAAATTAAAAAAGCGCTGACCTATCCGATTGCGGTGCTAGTTGTCGCGTTTGTCGTTACTGCCAT
TTTGCTGATTTTCGTCGTGCCGGTGTTCGAAGAGTTGTTTCAGAGCTTCGGAGCCGATCTGCCCGCTTTTACGAAGATGG
TTATCAGTCTTTCTGAGTGGATGCAGGAATGGTGGTGGATAATGGTCGGTAGTATCGTGGCGGCTGTCTATACGTTTAGT
TATTTCCATAAACGCTCAAGACCGTTCAATCATTTTCTTGACAGAACCTTATTGAAGATACCGGTTGTCGGGTTGATCTT
GAATAAATCGGCCATCGCACGCTTCTCCAGAACGTTGTCAACAATGTCCGCTGCCGGCGTTCCGTTAGTCGAAGCGCTGG
AATCGGTTGCCGGGGCTTGCGGAAACATTATTTATGCCGATGCTGTATTGAAGATGCGCGAAGACGTCGCGACCGGCCAA
CGCCTGCAATTTGCCATGCAGCAGACCGTTTTGTTCCCCCACATGGTCATCCAAATGGTCGCGATCGGTGAGGAATCCGG
TTCGATAGATACGATGCTGAGCAAGGTTGCCGATTTTTACGAAGAAGAGGTCGATAATTTGGTAGATAATCTCAGTAGTT
TGATGGAGCCGTTGATCATGTCGGTGCTGGGTGTCTTGGTTGGGGGATTGATCGTCGCGATGTATCTGCCGATCTTTAAA
ATGGGCGCGGCAGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	61.055	98.03	0.599
pilC	Acinetobacter baumannii D1279779	58.69	97.783	0.574
pilC	Pseudomonas stutzeri DSM 10701	58.586	97.537	0.571
pilC	Acinetobacter baylyi ADP1	56.423	97.783	0.552
pilG	Neisseria meningitidis 44/76-A	46.269	99.015	0.458
pilG	Neisseria gonorrhoeae MS11	46.02	99.015	0.456
pilC	Vibrio cholerae strain A1552	41.457	98.03	0.406
pilC	Vibrio campbellii strain DS40M4	40.955	98.03	0.401
pilC	Thermus thermophilus HB27	37.94	98.03	0.372