Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VUK15_RS07395 Genome accession   NZ_CP150462
Coordinates   390473..391699 (-) Length   408 a.a.
NCBI ID   WP_068969232.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. piscicida strain NH-LM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385473..396699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK15_RS07370 (VUK15_07370) mutT 387118..387525 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  VUK15_RS07375 (VUK15_07375) yacG 387786..387995 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  VUK15_RS07380 (VUK15_07380) zapD 388004..388741 (-) 738 WP_005297594.1 cell division protein ZapD -
  VUK15_RS07385 (VUK15_07385) coaE 388809..389411 (-) 603 WP_151182736.1 dephospho-CoA kinase -
  VUK15_RS07390 (VUK15_07390) pilD 389413..390291 (-) 879 WP_340642184.1 prepilin peptidase Machinery gene
  VUK15_RS07395 (VUK15_07395) pilC 390473..391699 (-) 1227 WP_068969232.1 type II secretion system F family protein Machinery gene
  VUK15_RS07400 (VUK15_07400) pilB 391765..393456 (-) 1692 WP_340642185.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VUK15_RS07405 (VUK15_07405) - 393456..393878 (-) 423 WP_340642186.1 pilin -
  VUK15_RS07410 (VUK15_07410) ampD 394394..394972 (+) 579 WP_340642187.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VUK15_RS07415 (VUK15_07415) pdhR 395332..396105 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45030.18 Da        Isoelectric Point: 10.0330

>NTDB_id=970368 VUK15_RS07395 WP_068969232.1 390473..391699(-) (pilC) [Photobacterium damselae subsp. piscicida strain NH-LM2]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAIGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=970368 VUK15_RS07395 WP_068969232.1 390473..391699(-) (pilC) [Photobacterium damselae subsp. piscicida strain NH-LM2]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCCTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ACCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCAGGGGTCCCAATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCATCATAAAGCAGAAGTGCGCGCAGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAAGTATTTGTTCGCTTAGCTACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTATAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATCCCCCTACTAACAG
GCCTACAGTCGGCAGGTAAAACCGCAGGAAACTTACATATAGAAGAGGCCATTATGGAAGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTACAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.75

98.039

0.547
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilG Neisseria meningitidis 44/76-A

42.469

99.265

0.422
  pilG Neisseria gonorrhoeae MS11

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373

Multiple sequence alignment