Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CTR2_RS03935 Genome accession   NZ_AP026738
Coordinates   865241..866458 (-) Length   405 a.a.
NCBI ID   WP_087084999.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain R2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860241..871458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTR2_RS03905 (CTR2_R07560) - 861054..861989 (+) 936 WP_034381627.1 ATP-binding protein -
  CTR2_RS03910 (CTR2_R07570) - 862002..862472 (+) 471 WP_087085003.1 NUDIX domain-containing protein -
  CTR2_RS03915 (CTR2_R07580) - 862590..862799 (-) 210 WP_034357520.1 DNA gyrase inhibitor YacG -
  CTR2_RS03920 (CTR2_R07590) zapD 862899..863654 (-) 756 WP_087085002.1 cell division protein ZapD -
  CTR2_RS03925 (CTR2_R07600) coaE 863742..864368 (-) 627 WP_087085001.1 dephospho-CoA kinase -
  CTR2_RS03930 (CTR2_R07610) - 864372..865241 (-) 870 WP_087085000.1 A24 family peptidase -
  CTR2_RS03935 (CTR2_R07620) pilC 865241..866458 (-) 1218 WP_087084999.1 type II secretion system F family protein Machinery gene
  CTR2_RS03940 (CTR2_R07630) pilB 866483..868225 (-) 1743 WP_087084998.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CTR2_RS03950 (CTR2_R07640) - 868479..869408 (-) 930 WP_003062198.1 polyprenyl synthetase family protein -
  CTR2_RS03955 (CTR2_R07650) rplU 869751..870062 (+) 312 WP_003058536.1 50S ribosomal protein L21 -
  CTR2_RS03960 (CTR2_R07660) rpmA 870079..870336 (+) 258 WP_003058534.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44525.27 Da        Isoelectric Point: 9.6163

>NTDB_id=96773 CTR2_RS03935 WP_087084999.1 865241..866458(-) (pilC) [Comamonas thiooxydans strain R2]
MASAASKGIKEFLFEWEGKDRNGKIVRGETRAGGENQIQAMLRRQGVTPSKIKKRRTRGGRKIKPKDIALFTRQLATMMK
AGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLYFNSLYCNLVEAGEAAGILESLLDRLATYMEKT
EAIKSKIKSALMYPTSVMIVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISEYFVQYWWLIFGVLGGGIYFFM
QAWKRNERVQQFMDRTILKLPIFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNYLYKNATDRIQSEVSTGT
SLTVAMANANIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=96773 CTR2_RS03935 WP_087084999.1 865241..866458(-) (pilC) [Comamonas thiooxydans strain R2]
ATGGCAAGCGCAGCGTCCAAGGGAATCAAGGAATTTCTCTTTGAGTGGGAAGGCAAGGACCGCAACGGCAAGATCGTTCG
CGGCGAGACTCGTGCCGGCGGAGAAAACCAGATCCAGGCCATGCTGCGCCGCCAGGGCGTGACTCCGTCCAAGATCAAGA
AGCGCAGGACCCGCGGCGGCAGGAAGATCAAGCCCAAGGACATTGCGCTGTTCACGCGCCAGCTGGCCACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCTTTCGACATCGTGGGCCGGGGCAATACCAACCCCAATGTCACCAAGCTGCTCAACGA
CATCCGCTCCGATGTGGAAACCGGCACCTCGCTGAGCGCTGCCTTTCGCAAGTTTCCGCTCTATTTCAACAGTCTCTACT
GCAATCTGGTGGAGGCCGGCGAGGCCGCAGGTATTCTGGAATCGCTGCTGGACCGTCTTGCCACCTATATGGAGAAGACG
GAAGCCATCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCCACGTCGGTCATGATCGTGGCCTTTGTCGTGGTGGCCGT
GATCATGATTTTCGTGATTCCGGCCTTCAAGGAGGTCTTCACCTCCTTTGGCGCCGACCTGCCTGCGCCCACGCTGCTGG
TGATGGGCATCAGCGAGTATTTCGTCCAGTACTGGTGGCTGATCTTTGGCGTGCTGGGCGGCGGCATCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGAGTGCAGCAGTTCATGGACCGCACCATACTCAAGCTGCCCATCTTCGGCGTGCTGAT
CGAGAAGTCCTGTGTGGCCCGCTGGACACGTACGCTGTCCACCATGTTTGCTGCCGGCGTGCCGCTGGTCGAGGCACTGG
ACTCCGTGGGAGGCGCTTCGGGCAACTACCTCTATAAAAACGCCACCGACAGGATTCAGTCGGAAGTCTCCACGGGCACC
AGCCTGACCGTGGCCATGGCCAATGCCAATATCTTCCCTTCCATGGTGCTGCAGATGTGTGCCATCGGCGAGGAATCGGG
CGCCATCGACCATATGCTGGGCAAGGCAGCCGATTTCTATGAAAGCGAAGTCGACGAAATGGTGGCGGGCCTCTCCAGCC
TGATGGAGCCCATCATCATCGTCTTCCTGGGTACCTTGATCGGCGGCATCGTGGTGTCCATGTATCTGCCTATCTTCAAG
CTGGGTCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.713

99.753

0.536
  pilG Neisseria gonorrhoeae MS11

51.889

98.025

0.509
  pilG Neisseria meningitidis 44/76-A

51.637

98.025

0.506
  pilC Legionella pneumophila strain ERS1305867

51.01

97.778

0.499
  pilC Acinetobacter baylyi ADP1

49.497

98.272

0.486
  pilC Acinetobacter baumannii D1279779

48.111

98.025

0.472
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

38.06

99.259

0.378
  pilC Thermus thermophilus HB27

36.75

98.765

0.363

Multiple sequence alignment