Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACKUBV_RS06935 | Genome accession | NZ_CP176357 |
| Coordinates | 1475318..1475602 (-) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AG1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1470318..1480602
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKUBV_RS06910 (ACKUBV_06910) | - | 1470815..1472029 (+) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACKUBV_RS06915 (ACKUBV_06915) | yfbR | 1472120..1472704 (+) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| ACKUBV_RS06920 (ACKUBV_06920) | - | 1472717..1474051 (+) | 1335 | WP_050550996.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACKUBV_RS06925 (ACKUBV_06925) | - | 1474058..1474672 (-) | 615 | WP_005456903.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACKUBV_RS06930 (ACKUBV_06930) | rrtA | 1474676..1475227 (+) | 552 | WP_069536296.1 | rhombosortase | - |
| ACKUBV_RS06935 (ACKUBV_06935) | comEA | 1475318..1475602 (-) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| ACKUBV_RS06940 (ACKUBV_06940) | ppiD | 1475753..1477612 (-) | 1860 | WP_069536297.1 | peptidylprolyl isomerase | - |
| ACKUBV_RS06945 (ACKUBV_06945) | - | 1477812..1478084 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=966739 ACKUBV_RS06935 WP_021449594.1 1475318..1475602(-) (comEA) [Vibrio parahaemolyticus strain AG1]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=966739 ACKUBV_RS06935 WP_021449594.1 1475318..1475602(-) (comEA) [Vibrio parahaemolyticus strain AG1]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |