Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | MKY42_RS07020 | Genome accession | NZ_CP150216 |
| Coordinates | 1574764..1575144 (+) | Length | 126 a.a. |
| NCBI ID | WP_244192680.1 | Uniprot ID | - |
| Organism | Paenibacillus sp. FSL W7-1088 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1569764..1580144
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKY42_RS06995 (MKY42_06995) | groL | 1569886..1571517 (+) | 1632 | WP_090894309.1 | chaperonin GroEL | - |
| MKY42_RS07000 (MKY42_07000) | - | 1571608..1571844 (+) | 237 | WP_339849984.1 | hypothetical protein | - |
| MKY42_RS07005 (MKY42_07005) | - | 1572063..1573106 (+) | 1044 | WP_179265544.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| MKY42_RS07010 (MKY42_07010) | - | 1573280..1573717 (-) | 438 | WP_339849986.1 | hypothetical protein | - |
| MKY42_RS07015 (MKY42_07015) | - | 1574234..1574497 (-) | 264 | WP_339849989.1 | DUF2642 domain-containing protein | - |
| MKY42_RS07020 (MKY42_07020) | nucA/comI | 1574764..1575144 (+) | 381 | WP_244192680.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| MKY42_RS07025 (MKY42_07025) | - | 1575407..1576309 (+) | 903 | WP_339849991.1 | helix-turn-helix domain-containing protein | - |
| MKY42_RS07030 (MKY42_07030) | - | 1576370..1576858 (+) | 489 | WP_113051837.1 | DinB family protein | - |
| MKY42_RS07035 (MKY42_07035) | - | 1577038..1577325 (+) | 288 | WP_090894322.1 | hypothetical protein | - |
| MKY42_RS07040 (MKY42_07040) | - | 1577511..1578194 (+) | 684 | WP_339852771.1 | hypothetical protein | - |
| MKY42_RS07045 (MKY42_07045) | - | 1578317..1578838 (+) | 522 | WP_339849999.1 | GNAT family N-acetyltransferase | - |
| MKY42_RS07050 (MKY42_07050) | rhaD | 1579232..1580077 (+) | 846 | WP_339852773.1 | rhamnulose-1-phosphate aldolase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13556.96 Da Isoelectric Point: 5.1338
>NTDB_id=966600 MKY42_RS07020 WP_244192680.1 1574764..1575144(+) (nucA/comI) [Paenibacillus sp. FSL W7-1088]
MALSGSVYVQPSSTVQGAATTYTLTFPMDRYPETGAHIRDAIAAGHSAVCTIDRDGADANRRESLKGYPTKAGYDRDEWP
MAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYADGTRVKFTVK
MALSGSVYVQPSSTVQGAATTYTLTFPMDRYPETGAHIRDAIAAGHSAVCTIDRDGADANRRESLKGYPTKAGYDRDEWP
MAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYADGTRVKFTVK
Nucleotide
Download Length: 381 bp
>NTDB_id=966600 MKY42_RS07020 WP_244192680.1 1574764..1575144(+) (nucA/comI) [Paenibacillus sp. FSL W7-1088]
ATGGCTTTATCTGGGAGTGTATATGTACAGCCCTCTTCAACAGTCCAGGGTGCTGCTACCACGTACACGTTGACCTTCCC
GATGGATCGTTACCCGGAGACAGGAGCACATATTCGTGATGCCATTGCAGCAGGACATTCGGCAGTTTGTACCATTGATC
GGGATGGGGCGGATGCCAATCGCAGAGAGTCGCTGAAAGGCTATCCGACCAAGGCGGGTTATGACCGGGATGAGTGGCCG
ATGGCGATGTGTGAAGAAGGTGGCGCGGGCGCTGATATTAGATACATAAGTCCAAGTGATAACAGGGGAGCTGGCTCCTG
GGTGGGCAATCAGTTGGAGCAGTATGCCGATGGGACAAGGGTCAAGTTTACAGTAAAATGA
ATGGCTTTATCTGGGAGTGTATATGTACAGCCCTCTTCAACAGTCCAGGGTGCTGCTACCACGTACACGTTGACCTTCCC
GATGGATCGTTACCCGGAGACAGGAGCACATATTCGTGATGCCATTGCAGCAGGACATTCGGCAGTTTGTACCATTGATC
GGGATGGGGCGGATGCCAATCGCAGAGAGTCGCTGAAAGGCTATCCGACCAAGGCGGGTTATGACCGGGATGAGTGGCCG
ATGGCGATGTGTGAAGAAGGTGGCGCGGGCGCTGATATTAGATACATAAGTCCAAGTGATAACAGGGGAGCTGGCTCCTG
GGTGGGCAATCAGTTGGAGCAGTATGCCGATGGGACAAGGGTCAAGTTTACAGTAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
59.677 |
98.413 |
0.587 |