Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACICHK_RS14815 Genome accession   NZ_CP174283
Coordinates   3285021..3285629 (-) Length   202 a.a.
NCBI ID   WP_192582552.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3280021..3290629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS14800 (ACICHK_14800) - 3281271..3282206 (+) 936 WP_406837264.1 hypothetical protein -
  ACICHK_RS14805 (ACICHK_14805) clpX 3282777..3284063 (-) 1287 WP_151471405.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACICHK_RS14810 (ACICHK_14810) clpP 3284223..3284903 (-) 681 WP_037618822.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACICHK_RS14815 (ACICHK_14815) clpP 3285021..3285629 (-) 609 WP_192582552.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACICHK_RS14820 (ACICHK_14820) tig 3286099..3287484 (-) 1386 WP_406837265.1 trigger factor -
  ACICHK_RS14835 (ACICHK_14835) - 3288258..3288452 (-) 195 WP_103551386.1 hypothetical protein -
  ACICHK_RS14840 (ACICHK_14840) - 3289098..3290360 (+) 1263 WP_406837266.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21451.41 Da        Isoelectric Point: 4.5583

>NTDB_id=964896 ACICHK_RS14815 WP_192582552.1 3285021..3285629(-) (clpP) [Streptomyces sp. AHU1]
MPSAAGEPNFGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVE
QVTIDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=964896 ACICHK_RS14815 WP_192582552.1 3285021..3285629(-) (clpP) [Streptomyces sp. AHU1]
ATGCCCTCCGCCGCCGGTGAGCCCAACTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTGGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCTCCGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGTACCCCCGG
CAAGCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGTCTCGCGGGCTCCGCGTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCGCCTTCCACACCGGCCAGACGGTGGAG
CAGGTCACCATCGACTCGGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCAT
GCCCACCGCTGCCGGCATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.787

93.069

0.51
  clpP Lactococcus lactis subsp. cremoris KW2

56.069

85.644

0.48
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.491

85.644

0.475
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.139

0.47
  clpP Streptococcus mutans UA159

54.913

85.644

0.47
  clpP Streptococcus thermophilus LMD-9

53.757

85.644

0.46
  clpP Streptococcus thermophilus LMG 18311

53.757

85.644

0.46
  clpP Streptococcus pneumoniae Rx1

53.179

85.644

0.455
  clpP Streptococcus pneumoniae D39

53.179

85.644

0.455
  clpP Streptococcus pneumoniae R6

53.179

85.644

0.455
  clpP Streptococcus pneumoniae TIGR4

53.179

85.644

0.455
  clpP Streptococcus pyogenes JRS4

53.179

85.644

0.455
  clpP Streptococcus pyogenes MGAS315

53.179

85.644

0.455