Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACICHK_RS14810 Genome accession   NZ_CP174283
Coordinates   3284223..3284903 (-) Length   226 a.a.
NCBI ID   WP_037618822.1    Uniprot ID   A0A2I0SLD9
Organism   Streptomyces sp. AHU1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279223..3289903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS14800 (ACICHK_14800) - 3281271..3282206 (+) 936 WP_406837264.1 hypothetical protein -
  ACICHK_RS14805 (ACICHK_14805) clpX 3282777..3284063 (-) 1287 WP_151471405.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACICHK_RS14810 (ACICHK_14810) clpP 3284223..3284903 (-) 681 WP_037618822.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACICHK_RS14815 (ACICHK_14815) clpP 3285021..3285629 (-) 609 WP_192582552.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACICHK_RS14820 (ACICHK_14820) tig 3286099..3287484 (-) 1386 WP_406837265.1 trigger factor -
  ACICHK_RS14835 (ACICHK_14835) - 3288258..3288452 (-) 195 WP_103551386.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24953.39 Da        Isoelectric Point: 4.6288

>NTDB_id=964895 ACICHK_RS14810 WP_037618822.1 3284223..3284903(-) (clpP) [Streptomyces sp. AHU1]
MNDFPGSGLYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRGQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=964895 ACICHK_RS14810 WP_037618822.1 3284223..3284903(-) (clpP) [Streptomyces sp. AHU1]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGCACCCCGG
GCAAGCGCATGGCGCTCCCGAACGCGCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGACGCGGTCAGGTCTCGGAC
CTCGAGATCGCCGCGAACGAAATCCTCCGGATGCGCGGTCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATTTCCACCCGCAAGATGAACAACTCCGCGGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I0SLD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385