Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYE79_RS08820 Genome accession   NZ_CP150168
Coordinates   1804384..1805640 (-) Length   418 a.a.
NCBI ID   WP_000642671.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799384..1810640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS08795 (NYE79_08795) - 1799876..1800592 (-) 717 WP_000532894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NYE79_RS08800 (NYE79_08800) - 1800689..1802059 (-) 1371 WP_065371556.1 MATE family efflux transporter -
  NYE79_RS08805 (NYE79_08805) - 1802169..1802723 (+) 555 WP_070656881.1 GNAT family N-acetyltransferase -
  NYE79_RS08810 (NYE79_08810) - 1802855..1803049 (-) 195 WP_000415528.1 PspC domain-containing protein -
  NYE79_RS08815 (NYE79_08815) recA 1803178..1804329 (-) 1152 WP_001085520.1 recombinase RecA Machinery gene
  NYE79_RS08820 (NYE79_08820) cinA 1804384..1805640 (-) 1257 WP_000642671.1 competence/damage-inducible protein A Machinery gene
  NYE79_RS08825 (NYE79_08825) - 1805713..1806753 (-) 1041 WP_125384748.1 LCP family protein -
  NYE79_RS08830 (NYE79_08830) - 1806758..1807279 (-) 522 WP_125384749.1 GNAT family N-acetyltransferase -
  NYE79_RS08835 (NYE79_08835) tsaE 1807269..1807712 (-) 444 WP_084881499.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NYE79_RS08840 (NYE79_08840) comM 1807796..1808419 (-) 624 WP_084881500.1 hypothetical protein Regulator
  NYE79_RS08845 (NYE79_08845) ndk 1808554..1808973 (-) 420 WP_216728589.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45303.69 Da        Isoelectric Point: 4.9950

>NTDB_id=964634 NYE79_RS08820 WP_000642671.1 1804384..1805640(-) (cinA) [Streptococcus sp. FSL W8-0197]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKDLVFDPQAQEKLDIFFAHRPDYARTPNNERQAQIVEGATPLPNETGLAVGGVSEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGAKLYSRVLRFFGIGESQLVTILADLIDHQTDPTLAPYAKTGEVTLRLSTKAVSQERADQALDILENQI
LSRQTFEGISLRDICYGYGEETSLASVVVEELKKRQKRITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DIYEQELKEHGVVSEFTARKMAEQARIKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=964634 NYE79_RS08820 WP_000642671.1 1804384..1805640(-) (cinA) [Streptococcus sp. FSL W8-0197]
ATGAAAGCAGAAATTATTGCTGTTGGAACAGAAATTTTAACAGGGCAGATTGTCAATACCAATGCTCAGTTTTTATCAGA
GAAACTAGCCGAAATCGGGGTAGATGTCTACTTCCAAACAGCTGTTGGAGATAATGAAGCTCGTCTTTTGTCCTTGCTTG
AGATTGCGAGTCAACGTAGTAATCTTGTGATTTTGACAGGGGGCTTGGGACCAACCGAGGATGATTTGACCAAACAAACC
CTGGCAAAATTTTTGGGAAAAGATCTAGTGTTTGACCCTCAAGCGCAAGAGAAACTGGATATTTTCTTTGCTCATAGACC
TGACTATGCTCGGACACCGAATAATGAGCGCCAAGCCCAAATTGTAGAAGGGGCGACTCCACTGCCAAATGAGACAGGTT
TAGCAGTAGGAGGGGTGTCGGAAGTGGATGGCGTGACCTACGTGGTCCTCCCAGGACCACCTAGTGAATTGAAACCTATG
GTCTTAAATCAACTCTTACCCAAGTTAATGACTGGTGCTAAGCTCTACTCACGAGTGCTCCGTTTCTTTGGAATTGGTGA
GAGTCAGTTGGTGACCATTTTGGCGGATTTGATTGACCATCAAACCGATCCGACCTTGGCGCCGTATGCCAAGACGGGAG
AAGTGACCTTGCGTTTGTCTACAAAAGCAGTTAGTCAAGAAAGGGCTGATCAAGCACTGGATATCTTAGAAAATCAAATC
TTGAGTCGCCAAACTTTCGAGGGAATTTCTCTACGAGACATCTGTTATGGATATGGGGAAGAAACCAGTCTCGCAAGTGT
CGTTGTAGAAGAGCTAAAGAAGAGACAGAAAAGAATTACTGCGGCAGAAAGCTTGACGGCAGGTCTCTTTCAAGCAACAT
TAGCAGACTTTTCGGGCGTTTCAGCAATCTTTAATGGCGGTTTTGTCACTTACAGCCTAGAAGAAAAGTCTAAGATGTTG
GATATTTACGAGCAAGAGCTAAAAGAACACGGGGTCGTTTCTGAGTTTACGGCTCGAAAAATGGCAGAGCAGGCACGGAT
CAAGACTCAGTCTGATTATGGTGTCAGTCTGACAGGTGTAGCTGGGCCAGATAGCCTAGAGGGTCATCCAGCTGGTACAG
TTTTTATTGGACTGGCACATGCCAAAGGGACAGAGGTGATCAAGGCCAATATAGCAGGACGGAGTCGAGCAGATGTTCGA
CATATTGCGGTCATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

90.191

100

0.902
  cinA Streptococcus pneumoniae TIGR4

89.713

100

0.897
  cinA Streptococcus pneumoniae Rx1

89.713

100

0.897
  cinA Streptococcus pneumoniae R6

89.713

100

0.897
  cinA Streptococcus mitis NCTC 12261

89.474

100

0.895
  cinA Streptococcus pneumoniae D39

89.474

100

0.895
  cinA Streptococcus mutans UA159

70.574

100

0.706
  cinA Streptococcus suis isolate S10

55.048

99.522

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment