Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ83_RS16755 Genome accession   NZ_CP150157
Coordinates   3210071..3210715 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. PS217     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3205071..3215715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS16720 (NSQ83_16720) - 3206263..3206694 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NSQ83_RS16725 (NSQ83_16725) - 3206694..3207035 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSQ83_RS16730 (NSQ83_16730) - 3207028..3208509 (+) 1482 WP_204551362.1 Na+/H+ antiporter subunit D -
  NSQ83_RS16735 (NSQ83_16735) - 3208515..3208991 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NSQ83_RS16740 (NSQ83_16740) - 3208991..3209275 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ83_RS16745 (NSQ83_16745) mnhG 3209259..3209633 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  NSQ83_RS16750 (NSQ83_16750) - 3209672..3210052 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  NSQ83_RS16755 (NSQ83_16755) comA 3210071..3210715 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSQ83_RS16760 (NSQ83_16760) comP 3210796..3213108 (-) 2313 WP_077671126.1 histidine kinase Regulator
  NSQ83_RS16765 (NSQ83_16765) comX 3213124..3213345 (-) 222 WP_014480704.1 competence pheromone ComX -
  NSQ83_RS16770 (NSQ83_16770) - 3213347..3214210 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  NSQ83_RS16775 (NSQ83_16775) degQ 3214395..3214535 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSQ83_RS16780 (NSQ83_16780) - 3214757..3214882 (+) 126 WP_121549029.1 hypothetical protein -
  NSQ83_RS16785 (NSQ83_16785) - 3214997..3215365 (+) 369 WP_038427878.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=963849 NSQ83_RS16755 WP_003220716.1 3210071..3210715(-) (comA) [Bacillus sp. PS217]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=963849 NSQ83_RS16755 WP_003220716.1 3210071..3210715(-) (comA) [Bacillus sp. PS217]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTTGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1