Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WKR14_RS02040 Genome accession   NZ_CP149966
Coordinates   416353..417621 (-) Length   422 a.a.
NCBI ID   WP_039033595.1    Uniprot ID   -
Organism   Shewanella chilikensis strain ST10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411353..422621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKR14_RS21340 - 413118..413286 (-) 169 Protein_372 transposase -
  WKR14_RS02015 (WKR14_02015) mutT 413360..413758 (-) 399 WP_339087272.1 8-oxo-dGTP diphosphatase MutT -
  WKR14_RS02020 (WKR14_02020) yacG 413755..413970 (-) 216 WP_039033599.1 DNA gyrase inhibitor YacG -
  WKR14_RS02025 (WKR14_02025) zapD 414015..414755 (-) 741 WP_165564352.1 cell division protein ZapD -
  WKR14_RS02030 (WKR14_02030) coaE 414752..415363 (-) 612 WP_101055953.1 dephospho-CoA kinase -
  WKR14_RS02035 (WKR14_02035) pilD 415364..416278 (-) 915 WP_339087273.1 A24 family peptidase Machinery gene
  WKR14_RS02040 (WKR14_02040) pilC 416353..417621 (-) 1269 WP_039033595.1 type II secretion system F family protein Machinery gene
  WKR14_RS02045 (WKR14_02045) pilB 417797..419503 (-) 1707 WP_339087275.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WKR14_RS02050 (WKR14_02050) - 419882..420862 (+) 981 WP_000082736.1 IS5-like element ISEc68 family transposase -
  WKR14_RS02055 (WKR14_02055) - 421024..421218 (-) 195 Protein_381 pilin -
  WKR14_RS02060 (WKR14_02060) - 421287..421667 (+) 381 WP_339087276.1 hypothetical protein -
  WKR14_RS02065 (WKR14_02065) - 421973..422185 (-) 213 WP_339087277.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45903.23 Da        Isoelectric Point: 10.2875

>NTDB_id=962384 WKR14_RS02040 WP_039033595.1 416353..417621(-) (pilC) [Shewanella chilikensis strain ST10]
MATATATAKNNKAKTKGAKAQAKIYTFTWKGLNRDGKQSSGELRGASIAEIKSLLKNQGINPKLVRKKSASLFGGDKKIK
PMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRILLGTVLADVQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFAGFGAELPAFTQLIVNISRWLQST
WYLFLAAIVIGVWLFVRAHRNSEKFRNRIDEMVLKIPLIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=962384 WKR14_RS02040 WP_039033595.1 416353..417621(-) (pilC) [Shewanella chilikensis strain ST10]
ATGGCCACAGCAACGGCAACAGCTAAAAACAATAAAGCCAAAACCAAAGGTGCCAAGGCTCAAGCCAAGATCTACACCTT
CACCTGGAAAGGTCTTAACCGCGATGGCAAGCAAAGCTCCGGCGAATTGCGCGGCGCCAGCATTGCCGAAATCAAAAGCT
TGCTGAAAAACCAGGGGATTAATCCCAAACTGGTACGTAAAAAGTCTGCCTCTCTCTTTGGCGGTGATAAAAAAATCAAG
CCGATGGATATCGCGGTGATCACCCGCCAGATAGCCACCATGCTGGCCGCAGGTGTGCCCTTGGTGACCTCCATCGAGTT
GATTGCCCGCGGCCATGAGAAAAACAAGGTGCGTATTTTGCTGGGCACTGTGCTGGCCGATGTTCAGGCCGGTATCCCCC
TTTCCGATGCCCTGCGCCCCCACAGGGCTTATTTCGACGATCTCTATGTCGACCTGGTGGCCGCCGGGGAACATTCCGGC
TCTTTGGATGCGGTATTTGACCGTATCGCGACCTACAGAGAAAAAGCCGAGGCGCTCAAGTCCAAGATCAAAAAAGCCAT
GTTCTATCCCGCGGCGGTAGTTGTGGTTGCCATAGCAGTTACTGTGCTGCTATTGCTGTTTGTGGTACCTCAGTTCGAAA
GTATCTTTGCCGGCTTTGGCGCCGAACTGCCCGCCTTTACCCAGTTGATAGTTAATATAAGCCGTTGGCTGCAAAGTACC
TGGTATCTGTTTCTCGCGGCAATTGTTATCGGGGTTTGGCTGTTTGTCCGCGCCCATCGCAACTCGGAAAAGTTTCGTAA
CCGTATCGATGAAATGGTGCTTAAAATTCCCCTGATTGGCGAAATTCTCCATAAGGCTGCCATGGCCCGTTTCGCCCGCA
CCCTGGCCACTACCTTTGCCGCCGGGGTACCGCTGATTGATGGCCTGGAGTCCGCCGCCGGCGCCTCCGGTAACTATGTC
TACCGCAAGGCCCTGCTGAATGTACGTACCGAAGTGATGGCCGGTATGCAAATGAACGTAGCCATGCGTACCACCAAGCT
GTTTCCCGATATGCTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCGCTGGATAATATGCTCAACAAGATAGCCA
ATATTTACGAGATGCAGGTAGATGACGCCGTAGACGGGCTTTCCAGCCTGATTGAACCCATTATGATGGTGGTGATAGGT
ACTCTGGTAGGCGGCCTTATTGTAGGTATGTACCTGCCTATCTTCCAAATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.188

95.735

0.538
  pilC Acinetobacter baylyi ADP1

50.246

96.209

0.483
  pilC Legionella pneumophila strain ERS1305867

49.257

95.735

0.472
  pilC Acinetobacter baumannii D1279779

49.497

94.313

0.467
  pilC Vibrio cholerae strain A1552

47.236

94.313

0.445
  pilC Vibrio campbellii strain DS40M4

44.776

95.261

0.427
  pilG Neisseria meningitidis 44/76-A

43.081

90.758

0.391
  pilG Neisseria gonorrhoeae MS11

43.081

90.758

0.391