NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	WKR14_RS02035	Genome accession	NZ_CP149966
Coordinates	415364..416278 (-)	Length	304 a.a.
NCBI ID	WP_339087273.1	Uniprot ID	-
Organism	Shewanella chilikensis strain ST10
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 410364..421278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKR14_RS21340	-	413118..413286 (-)	169	Protein_372	transposase	-
WKR14_RS02015 (WKR14_02015)	mutT	413360..413758 (-)	399	WP_339087272.1	8-oxo-dGTP diphosphatase MutT	-
WKR14_RS02020 (WKR14_02020)	yacG	413755..413970 (-)	216	WP_039033599.1	DNA gyrase inhibitor YacG	-
WKR14_RS02025 (WKR14_02025)	zapD	414015..414755 (-)	741	WP_165564352.1	cell division protein ZapD	-
WKR14_RS02030 (WKR14_02030)	coaE	414752..415363 (-)	612	WP_101055953.1	dephospho-CoA kinase	-
WKR14_RS02035 (WKR14_02035)	pilD	415364..416278 (-)	915	WP_339087273.1	A24 family peptidase	Machinery gene
WKR14_RS02040 (WKR14_02040)	pilC	416353..417621 (-)	1269	WP_039033595.1	type II secretion system F family protein	Machinery gene
WKR14_RS02045 (WKR14_02045)	pilB	417797..419503 (-)	1707	WP_339087275.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WKR14_RS02050 (WKR14_02050)	-	419882..420862 (+)	981	WP_000082736.1	IS5-like element ISEc68 family transposase	-
WKR14_RS02055 (WKR14_02055)	-	421024..421218 (-)	195	Protein_381	pilin	-

Sequence

Protein

Download Length: 304 a.a. Molecular weight: 33864.45 Da Isoelectric Point: 7.8945

                                >NTDB_id=962383 WKR14_RS02035 WP_339087273.1 415364..416278(-) (pilD) [Shewanella chilikensis strain ST10]

MSDFIAILSHNLWLFLVLCFLFASVIGSFLNVVIHRLPVMMKRDWQQECNQYLQEYQPEFAKQIGEAKLNAPIDNYPAKY

NLLLPKSACPKCGAHIKPWHNLPIIGYLMLGGKCAACKTKISARYPLFELLTALLICTLAWHFGPTLQFAYATILTFGLI

ALSGIDLDEMLLPDQITLPLLWLGLLINISGTFTSITDATIGAAAGYLSLWSIYWLFKLITGKEGMGYGDFKLMALFGAW

LGWQMLPLIILLSSLVGALVGVLLIVFKNLNRGNPIPFGPYIAIAGWVAMVWGQQIVDWYLGTL

Nucleotide

Download Length: 915 bp

                                >NTDB_id=962383 WKR14_RS02035 WP_339087273.1 415364..416278(-) (pilD) [Shewanella chilikensis strain ST10]

ATGTCAGACTTTATTGCCATATTGAGCCACAATCTGTGGCTCTTTCTTGTTCTCTGTTTTCTGTTTGCCTCTGTGATAGG

CAGCTTTCTCAATGTGGTAATCCACCGTCTGCCGGTAATGATGAAGCGCGATTGGCAGCAGGAATGCAATCAATACCTGC

AGGAATACCAGCCCGAATTCGCCAAACAGATAGGTGAAGCCAAGCTCAATGCACCGATAGATAACTACCCGGCCAAGTAC

AATCTGTTGCTGCCGAAGTCTGCCTGCCCCAAGTGCGGCGCTCATATCAAACCCTGGCACAACTTACCCATAATCGGTTA

CCTGATGCTTGGCGGCAAATGCGCTGCCTGTAAGACCAAGATCTCGGCAAGATATCCTCTGTTCGAGTTGTTGACTGCCC

TACTCATTTGTACGCTCGCTTGGCACTTTGGTCCAACACTGCAGTTTGCCTATGCAACTATTCTGACCTTTGGACTGATA

GCCCTCAGCGGCATAGATTTGGATGAGATGCTGTTGCCTGACCAGATAACCCTGCCGCTGCTGTGGCTCGGTTTACTGAT

TAATATCTCCGGCACTTTTACCAGCATTACCGATGCCACCATAGGCGCCGCAGCCGGTTATTTAAGCCTCTGGTCTATCT

ACTGGCTGTTCAAATTAATCACCGGCAAGGAAGGCATGGGTTATGGCGATTTCAAGCTGATGGCTCTATTCGGCGCCTGG

CTGGGCTGGCAGATGCTGCCACTGATAATTCTGCTCTCTTCTTTGGTGGGCGCCCTGGTAGGTGTGTTACTCATAGTGTT

CAAGAACCTCAATCGGGGTAACCCCATTCCCTTTGGCCCCTATATTGCCATAGCCGGTTGGGTTGCCATGGTGTGGGGGC

AACAGATAGTTGACTGGTACTTGGGAACACTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	51.536	96.382	0.497
pilD	Acinetobacter nosocomialis M2	49.669	99.342	0.493
pilD	Acinetobacter baumannii D1279779	49.338	99.342	0.49
pilD	Vibrio campbellii strain DS40M4	48.197	100	0.484
pilD	Neisseria gonorrhoeae MS11	45.552	92.434	0.421

Detailed information NTG0962383