Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | WKR14_RS02045 | Genome accession | NZ_CP149966 |
| Coordinates | 417797..419503 (-) | Length | 568 a.a. |
| NCBI ID | WP_339087275.1 | Uniprot ID | - |
| Organism | Shewanella chilikensis strain ST10 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 419882..420862 | 417797..419503 | flank | 379 |
Gene organization within MGE regions
Location: 417797..420862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WKR14_RS02045 (WKR14_02045) | pilB | 417797..419503 (-) | 1707 | WP_339087275.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| WKR14_RS02050 (WKR14_02050) | - | 419882..420862 (+) | 981 | WP_000082736.1 | IS5-like element ISEc68 family transposase | - |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 62998.99 Da Isoelectric Point: 5.2471
>NTDB_id=962385 WKR14_RS02045 WP_339087275.1 417797..419503(-) (pilB) [Shewanella chilikensis strain ST10]
MPTTGLHLGLSTLFIRKGLLNESSLTEAIKQSQNSNQALVTTLVTSKLLSARSIAELCYEEYGTPLLDLNEFDLSSIPDE
FLNKKLIDKHRCLPLFKRGNRLYIATSDPTNIAALEDFQFSAGLHAEAILVEEDKLAKALEKVLEEDLSSLDLDGLDEES
LADIEVTDTDKRQHEDNEGKDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLSGRISAR
LKVMSKLDIAERRVPQDGRIKMRLSRNKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEEDQKQAYMEMLARPQ
GMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINPKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSSAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECRQAEEVPEHELLQLGFS
QQQIDSGFTVYKPCGCEHCSGGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIAATAKQQGMRDLRLSGLLKVIQGVTSIA
EVNRVTSY
MPTTGLHLGLSTLFIRKGLLNESSLTEAIKQSQNSNQALVTTLVTSKLLSARSIAELCYEEYGTPLLDLNEFDLSSIPDE
FLNKKLIDKHRCLPLFKRGNRLYIATSDPTNIAALEDFQFSAGLHAEAILVEEDKLAKALEKVLEEDLSSLDLDGLDEES
LADIEVTDTDKRQHEDNEGKDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLSGRISAR
LKVMSKLDIAERRVPQDGRIKMRLSRNKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEEDQKQAYMEMLARPQ
GMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINPKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSSAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECRQAEEVPEHELLQLGFS
QQQIDSGFTVYKPCGCEHCSGGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIAATAKQQGMRDLRLSGLLKVIQGVTSIA
EVNRVTSY
Nucleotide
Download Length: 1707 bp
>NTDB_id=962385 WKR14_RS02045 WP_339087275.1 417797..419503(-) (pilB) [Shewanella chilikensis strain ST10]
ATGCCAACAACAGGCCTCCACTTAGGATTATCGACCCTATTTATCCGTAAGGGGCTGCTCAATGAGAGCAGCCTGACGGA
GGCCATCAAGCAGTCGCAAAACAGCAACCAAGCCCTGGTCACCACCCTGGTGACCAGCAAGCTTTTATCCGCCCGCAGCA
TAGCCGAGCTCTGTTATGAGGAGTACGGCACCCCGCTGCTGGATCTCAATGAGTTTGACCTCAGCAGTATTCCGGATGAG
TTTCTCAACAAGAAGCTGATCGACAAACACAGATGTCTGCCGCTGTTCAAGCGCGGCAACCGCCTCTATATCGCCACCTC
GGATCCCACCAATATCGCCGCCCTGGAAGACTTTCAGTTCAGCGCCGGCCTGCATGCCGAGGCGATACTGGTCGAAGAGG
ACAAGTTAGCCAAGGCGCTGGAAAAGGTACTGGAAGAGGACTTGAGCTCGCTGGATCTCGATGGCCTCGACGAAGAGTCC
CTCGCCGACATCGAAGTCACAGATACCGACAAGCGCCAACATGAAGATAATGAAGGCAAGGACGATGCCCCCATCGTCAT
CTATATCAATAAAATTCTCACCGATGCCATCCGTAAGGGCGCATCGGATCTGCATTTTGAACCCTACGAGAAACGCTACC
GCATCCGTTTTCGTATCGATGGCATACTCCATGAGGTGTCCGAGCCGCCGATTTCACTTTCCGGACGGATATCGGCTCGC
TTAAAGGTGATGTCCAAGCTGGATATCGCCGAGCGCCGGGTGCCCCAGGATGGCCGCATCAAGATGCGGCTGTCGCGCAA
CAAGAGCATCGATTTTCGAGTCAGCACCCTGCCCACCCTCTGGGGCGAAAAAATAGTGATGCGGATCCTCGACTCCTCTT
CAGCGCAGTTGGGCATAGAAAAGCTCGGCTATGAGGAAGACCAGAAACAAGCCTATATGGAGATGCTGGCAAGACCCCAG
GGGATGATATTGGTTACCGGCCCCACGGGATCTGGGAAAACCGTGTCCCTCTATACCGGCCTCAATATTCTCAACACCGA
AGAGCGTAATATCAGCACCGCCGAAGACCCGGTGGAGATTAACCTCGAAGGGGTTAATCAGGTACATATCAACCCCAAGG
CCGGGTTAACCTTCGCCTCGGCGCTGCGCTCCTTTCTGCGTCAGGATCCGGACGTGGTGATGGTGGGGGAAATTCGTGAC
CTGGAAACCGCCGAAATCGCCATCAAGGCGGCCCAAACCGGCCACTTGGTGCTCTCGACCCTGCACACCAACTCATCGGC
CGAAACCCTCACCCGTTTGCTCAATATGGGCGTACCCGGCTACAACATTGCCAGTTCGGTCAACCTGATTATTGCCCAGC
GCCTGGCCCGCCGTCTCTGTCCCGAATGCCGACAAGCGGAAGAGGTCCCCGAACATGAACTGCTGCAGCTGGGCTTCAGC
CAGCAACAGATAGATAGCGGTTTTACCGTTTATAAGCCCTGTGGCTGTGAGCACTGCTCCGGTGGCTATAAGGGCCGAGT
CGGTATCTATGAGGTGATGAAGATGTCCGATGAAATTGCCAGAACCATTATGGAAGGCGGTAATTCACTGCAGATTGCCG
CTACCGCCAAGCAGCAGGGAATGAGGGACTTGCGCCTGTCTGGCCTGCTTAAAGTCATTCAGGGCGTCACCAGCATTGCC
GAGGTCAACCGGGTAACCAGTTACTGA
ATGCCAACAACAGGCCTCCACTTAGGATTATCGACCCTATTTATCCGTAAGGGGCTGCTCAATGAGAGCAGCCTGACGGA
GGCCATCAAGCAGTCGCAAAACAGCAACCAAGCCCTGGTCACCACCCTGGTGACCAGCAAGCTTTTATCCGCCCGCAGCA
TAGCCGAGCTCTGTTATGAGGAGTACGGCACCCCGCTGCTGGATCTCAATGAGTTTGACCTCAGCAGTATTCCGGATGAG
TTTCTCAACAAGAAGCTGATCGACAAACACAGATGTCTGCCGCTGTTCAAGCGCGGCAACCGCCTCTATATCGCCACCTC
GGATCCCACCAATATCGCCGCCCTGGAAGACTTTCAGTTCAGCGCCGGCCTGCATGCCGAGGCGATACTGGTCGAAGAGG
ACAAGTTAGCCAAGGCGCTGGAAAAGGTACTGGAAGAGGACTTGAGCTCGCTGGATCTCGATGGCCTCGACGAAGAGTCC
CTCGCCGACATCGAAGTCACAGATACCGACAAGCGCCAACATGAAGATAATGAAGGCAAGGACGATGCCCCCATCGTCAT
CTATATCAATAAAATTCTCACCGATGCCATCCGTAAGGGCGCATCGGATCTGCATTTTGAACCCTACGAGAAACGCTACC
GCATCCGTTTTCGTATCGATGGCATACTCCATGAGGTGTCCGAGCCGCCGATTTCACTTTCCGGACGGATATCGGCTCGC
TTAAAGGTGATGTCCAAGCTGGATATCGCCGAGCGCCGGGTGCCCCAGGATGGCCGCATCAAGATGCGGCTGTCGCGCAA
CAAGAGCATCGATTTTCGAGTCAGCACCCTGCCCACCCTCTGGGGCGAAAAAATAGTGATGCGGATCCTCGACTCCTCTT
CAGCGCAGTTGGGCATAGAAAAGCTCGGCTATGAGGAAGACCAGAAACAAGCCTATATGGAGATGCTGGCAAGACCCCAG
GGGATGATATTGGTTACCGGCCCCACGGGATCTGGGAAAACCGTGTCCCTCTATACCGGCCTCAATATTCTCAACACCGA
AGAGCGTAATATCAGCACCGCCGAAGACCCGGTGGAGATTAACCTCGAAGGGGTTAATCAGGTACATATCAACCCCAAGG
CCGGGTTAACCTTCGCCTCGGCGCTGCGCTCCTTTCTGCGTCAGGATCCGGACGTGGTGATGGTGGGGGAAATTCGTGAC
CTGGAAACCGCCGAAATCGCCATCAAGGCGGCCCAAACCGGCCACTTGGTGCTCTCGACCCTGCACACCAACTCATCGGC
CGAAACCCTCACCCGTTTGCTCAATATGGGCGTACCCGGCTACAACATTGCCAGTTCGGTCAACCTGATTATTGCCCAGC
GCCTGGCCCGCCGTCTCTGTCCCGAATGCCGACAAGCGGAAGAGGTCCCCGAACATGAACTGCTGCAGCTGGGCTTCAGC
CAGCAACAGATAGATAGCGGTTTTACCGTTTATAAGCCCTGTGGCTGTGAGCACTGCTCCGGTGGCTATAAGGGCCGAGT
CGGTATCTATGAGGTGATGAAGATGTCCGATGAAATTGCCAGAACCATTATGGAAGGCGGTAATTCACTGCAGATTGCCG
CTACCGCCAAGCAGCAGGGAATGAGGGACTTGCGCCTGTCTGGCCTGCTTAAAGTCATTCAGGGCGTCACCAGCATTGCC
GAGGTCAACCGGGTAACCAGTTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
59.358 |
98.768 |
0.586 |
| pilB | Acinetobacter baumannii D1279779 |
58.111 |
98.768 |
0.574 |
| pilB | Legionella pneumophila strain ERS1305867 |
56.128 |
99.12 |
0.556 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
52.381 |
99.824 |
0.523 |
| pilB | Vibrio cholerae strain A1552 |
53.69 |
95.423 |
0.512 |
| pilB | Vibrio campbellii strain DS40M4 |
50.89 |
98.944 |
0.504 |
| pilF | Neisseria gonorrhoeae MS11 |
48.227 |
99.296 |
0.479 |
| pilF | Thermus thermophilus HB27 |
38.053 |
99.472 |
0.379 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
38.309 |
97.887 |
0.375 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
41.633 |
88.38 |
0.368 |