Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WDB71_RS01795 Genome accession   NZ_CP149925
Coordinates   347142..348392 (-) Length   416 a.a.
NCBI ID   WP_341502942.1    Uniprot ID   -
Organism   Gallaecimonas sp. GXIMD4217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342142..353392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDB71_RS01770 (WDB71_01770) mutT 344314..344715 (+) 402 WP_341502938.1 8-oxo-dGTP diphosphatase MutT -
  WDB71_RS01775 (WDB71_01775) yacG 344712..344900 (-) 189 WP_341502939.1 DNA gyrase inhibitor YacG -
  WDB71_RS01780 (WDB71_01780) zapD 344911..345636 (-) 726 WP_341502940.1 cell division protein ZapD -
  WDB71_RS01785 (WDB71_01785) coaE 345667..346278 (-) 612 WP_341504169.1 dephospho-CoA kinase -
  WDB71_RS01790 (WDB71_01790) pilD 346275..347135 (-) 861 WP_341502941.1 A24 family peptidase Machinery gene
  WDB71_RS01795 (WDB71_01795) pilC 347142..348392 (-) 1251 WP_341502942.1 type II secretion system F family protein Machinery gene
  WDB71_RS01800 (WDB71_01800) pilB 348402..350117 (-) 1716 WP_341502943.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WDB71_RS01805 (WDB71_01805) - 350323..350742 (-) 420 WP_341502944.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WDB71_RS01810 (WDB71_01810) nadC 350880..351731 (-) 852 WP_341502945.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WDB71_RS01815 (WDB71_01815) ampD 351855..352394 (+) 540 WP_341502946.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WDB71_RS01820 (WDB71_01820) ampE 352391..353200 (+) 810 WP_341502947.1 regulatory signaling modulator protein AmpE -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45777.92 Da        Isoelectric Point: 9.9532

>NTDB_id=962213 WDB71_RS01795 WP_341502942.1 347142..348392(-) (pilC) [Gallaecimonas sp. GXIMD4217]
MATATTTANKRKIQAVKLEVFTWKGVNRRGEKVQGEITGTKINEIKAQLRAQGITPKEVRKKPKPLFSMGQKVEAADIAA
ITRQLATMLASGVPLVQSLDIISKGNKKDAVREMMAKISADVQGGTLLSEALAKYPIYFDDLYRDLVAAGENSGAMETMF
DRIATYKEKQEELKSKIKKALFYPSAIVFVAIVVTAILLIFVVPQFEDIFHSFGAELPAFTQLWIKISHVVRDSWYIVLA
VLIVAGLMFRQAHRKSQDVRDRTDRFMLKIPIVGPILHKASLARFARTLATTFSAGVPLIEGLNSSAGASGNALYRDAIL
KVRREVETGMQMNVAMRTTAVFPEMVIQMVLIGEESGSIDEMMTKVAQIFEREVDDAVDGLMSLLEPAIMIVLGPLIGGL
VVAMYLPIFQLGQVVG

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=962213 WDB71_RS01795 WP_341502942.1 347142..348392(-) (pilC) [Gallaecimonas sp. GXIMD4217]
ATGGCTACCGCGACCACTACGGCCAATAAGAGAAAGATACAAGCCGTCAAACTGGAAGTCTTTACCTGGAAAGGCGTCAA
CCGCCGTGGTGAAAAGGTCCAGGGTGAGATCACCGGCACCAAGATCAACGAGATCAAGGCCCAGCTCAGGGCCCAGGGCA
TCACGCCCAAGGAGGTCCGTAAAAAGCCCAAGCCGCTGTTTTCCATGGGGCAAAAGGTAGAAGCGGCCGATATCGCCGCC
ATCACCCGCCAGCTGGCCACCATGCTGGCGTCCGGTGTCCCCTTGGTGCAGTCCCTGGACATCATCTCCAAGGGCAACAA
GAAGGATGCGGTACGGGAAATGATGGCCAAGATCAGTGCCGATGTGCAGGGTGGAACCCTGCTGTCGGAGGCCTTGGCCA
AGTACCCCATTTACTTTGATGATCTCTATCGCGATCTGGTAGCAGCAGGTGAAAACTCCGGTGCCATGGAAACCATGTTC
GACCGCATCGCCACCTACAAGGAGAAGCAGGAAGAGCTGAAGTCAAAGATCAAAAAGGCGCTCTTCTATCCTTCGGCCAT
CGTCTTCGTTGCCATAGTGGTTACGGCCATCCTGCTGATCTTTGTCGTGCCCCAATTCGAGGACATCTTCCACTCCTTTG
GCGCCGAACTGCCTGCCTTTACCCAGCTCTGGATCAAGATCTCCCATGTCGTCCGGGATTCCTGGTATATCGTATTGGCT
GTATTGATCGTCGCCGGCCTCATGTTCAGGCAAGCTCACCGCAAATCCCAGGATGTCAGGGACAGAACCGATAGGTTTAT
GCTTAAGATCCCAATAGTTGGCCCCATACTGCACAAAGCCTCTCTTGCCCGCTTTGCCCGTACCCTGGCCACCACCTTCT
CTGCCGGTGTGCCGCTTATCGAAGGTTTGAATTCATCGGCCGGCGCCTCCGGTAATGCCCTCTATCGTGATGCGATTTTG
AAGGTGCGCCGCGAGGTGGAAACCGGCATGCAGATGAACGTGGCCATGAGGACCACCGCCGTCTTCCCGGAGATGGTCAT
ACAGATGGTGCTGATCGGCGAAGAATCCGGCTCCATCGATGAGATGATGACCAAGGTTGCCCAAATCTTTGAGCGTGAGG
TGGACGATGCCGTCGACGGCCTGATGAGTCTGCTGGAACCTGCCATCATGATCGTTCTCGGCCCGCTCATCGGCGGCCTG
GTGGTGGCCATGTACCTGCCCATCTTCCAGCTGGGTCAAGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(285-407)

Type II secretion system (T2SS), protein F (T2SSF)

(82-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.473

96.635

0.536
  pilC Acinetobacter baylyi ADP1

52

96.154

0.5
  pilC Legionella pneumophila strain ERS1305867

51.629

95.913

0.495
  pilC Acinetobacter baumannii D1279779

49.752

97.115

0.483
  pilC Vibrio cholerae strain A1552

45.32

97.596

0.442
  pilC Vibrio campbellii strain DS40M4

43.171

98.558

0.425
  pilG Neisseria meningitidis 44/76-A

40.547

96.635

0.392
  pilG Neisseria gonorrhoeae MS11

40.299

96.635

0.389