Detailed information NTG0962212

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WDB71_RS01790
• Genome accession: NZ_CP149925
• Coordinates: 346275..347135 (-)
• Length: 286 a.a.
• NCBI ID: WP_341502941.1
• Uniprot ID: -
• Organism: Gallaecimonas sp. GXIMD4217
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 341275..352135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDB71_RS01765 (WDB71_01765)	secA	341549..344251 (+)	2703	WP_341502937.1	preprotein translocase subunit SecA	-
WDB71_RS01770 (WDB71_01770)	mutT	344314..344715 (+)	402	WP_341502938.1	8-oxo-dGTP diphosphatase MutT	-
WDB71_RS01775 (WDB71_01775)	yacG	344712..344900 (-)	189	WP_341502939.1	DNA gyrase inhibitor YacG	-
WDB71_RS01780 (WDB71_01780)	zapD	344911..345636 (-)	726	WP_341502940.1	cell division protein ZapD	-
WDB71_RS01785 (WDB71_01785)	coaE	345667..346278 (-)	612	WP_341504169.1	dephospho-CoA kinase	-
WDB71_RS01790 (WDB71_01790)	pilD	346275..347135 (-)	861	WP_341502941.1	A24 family peptidase	Machinery gene
WDB71_RS01795 (WDB71_01795)	pilC	347142..348392 (-)	1251	WP_341502942.1	type II secretion system F family protein	Machinery gene
WDB71_RS01800 (WDB71_01800)	pilB	348402..350117 (-)	1716	WP_341502943.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WDB71_RS01805 (WDB71_01805)	-	350323..350742 (-)	420	WP_341502944.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
WDB71_RS01810 (WDB71_01810)	nadC	350880..351731 (-)	852	WP_341502945.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31333.66 Da
• Isoelectric Point: 7.0284

>NTDB_id=962212 WDB71_RS01790 WP_341502941.1 346275..347135(-) (pilD) [Gallaecimonas sp. GXIMD4217]
MQLIELLSREPLWLAAFIGILGLLVGSFLNVVIHRLPLMLEARWKAESRDLLELEAEPEQAPFNLMTPHSHCPKCQSPVR
WYDNIPVLSWLLLAGKCRHCKAPIAIRYPLVELITGLMSAAVAWHFGATVLMVGALLLTWFLVALTFIDADTMLLPDDMT
LPLLWGGLAISLVGGLVTPEKAILGAMLGYLSLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGPAMLLQIVLLSSVFG
ALWGIIAAIRKGSQPMPFGPFLAIAGWVALIWGPAINAWYLGLLGH

Nucleotide

• Length: 861 bp

>NTDB_id=962212 WDB71_RS01790 WP_341502941.1 346275..347135(-) (pilD) [Gallaecimonas sp. GXIMD4217]
ATGCAGTTAATCGAACTCCTCTCCCGCGAGCCCCTGTGGCTCGCGGCTTTTATTGGCATCCTGGGCCTGCTGGTGGGCAG
CTTCCTCAATGTGGTTATCCACCGGCTGCCACTCATGCTGGAAGCGCGCTGGAAAGCGGAAAGCCGCGACCTCTTGGAAT
TGGAAGCCGAGCCAGAGCAGGCCCCCTTCAACCTGATGACACCCCACAGTCACTGCCCCAAGTGCCAATCACCGGTAAGG
TGGTACGACAATATCCCCGTGCTGTCCTGGCTGCTGCTGGCCGGCAAGTGCCGCCATTGCAAGGCCCCCATTGCCATTCG
TTATCCCCTGGTGGAGCTCATTACCGGCCTGATGTCGGCGGCGGTGGCCTGGCACTTTGGTGCGACCGTCCTCATGGTCG
GCGCCCTGCTGCTGACCTGGTTCCTGGTGGCGCTGACCTTTATCGATGCCGACACCATGCTGTTGCCGGACGACATGACC
CTGCCGCTGCTCTGGGGGGGACTTGCCATCAGCCTGGTGGGCGGCCTGGTCACACCGGAGAAGGCCATTTTGGGCGCCAT
GCTGGGCTACCTGTCGCTCTGGTCCGTTTATTGGGTGTTCAAACTGCTCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCTGCCCTTGGTGCCTGGCTTGGCCCGGCCATGCTGCTGCAGATAGTGCTGCTGTCATCCGTGTTCGGC
GCCCTCTGGGGCATCATCGCCGCCATCCGCAAGGGCAGCCAACCCATGCCCTTTGGACCTTTCCTGGCCATCGCCGGCTG
GGTCGCCCTCATCTGGGGGCCGGCCATTAACGCTTGGTACCTGGGGCTGTTGGGACACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.477	98.951	0.549
pilD	Vibrio campbellii strain DS40M4	53.71	98.951	0.531
pilD	Acinetobacter baumannii D1279779	55.597	93.706	0.521
pilD	Acinetobacter nosocomialis M2	54.851	93.706	0.514
pilD	Neisseria gonorrhoeae MS11	52.59	87.762	0.462