Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WKI13_RS07510 Genome accession   NZ_CP149817
Coordinates   1839363..1840577 (-) Length   404 a.a.
NCBI ID   WP_018276441.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain T7902     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834363..1845577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI13_RS07485 (WKI13_07485) argJ 1835520..1836737 (+) 1218 WP_018276436.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  WKI13_RS07490 (WKI13_07490) - 1836700..1837683 (+) 984 WP_232427050.1 Nudix family hydrolase -
  WKI13_RS07495 (WKI13_07495) - 1837677..1837877 (-) 201 WP_018276438.1 DNA gyrase inhibitor YacG -
  WKI13_RS07500 (WKI13_07500) coaE 1837867..1838475 (-) 609 WP_018276439.1 dephospho-CoA kinase -
  WKI13_RS07505 (WKI13_07505) - 1838475..1839362 (-) 888 WP_018276440.1 A24 family peptidase -
  WKI13_RS07510 (WKI13_07510) pilC 1839363..1840577 (-) 1215 WP_018276441.1 type II secretion system F family protein Machinery gene
  WKI13_RS07515 (WKI13_07515) pilB 1840581..1842308 (-) 1728 WP_018276442.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WKI13_RS07520 (WKI13_07520) - 1842707..1843204 (+) 498 WP_018276444.1 pilin -
  WKI13_RS07525 (WKI13_07525) - 1843296..1844048 (+) 753 WP_018276445.1 hypothetical protein -
  WKI13_RS07530 (WKI13_07530) nadC 1844080..1844934 (-) 855 WP_018276446.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WKI13_RS07535 (WKI13_07535) - 1844948..1845439 (-) 492 WP_230515118.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43879.72 Da        Isoelectric Point: 9.5792

>NTDB_id=961660 WKI13_RS07510 WP_018276441.1 1839363..1840577(-) (pilC) [Teredinibacter turnerae strain T7902]
MATASSELFVYKGVDKRGNKVSGEVSSQSSAMAKAQLLKQGIRANAVRKKPKPLFSGGKKKITPMDIALFTRQMATMMKA
GVPLVQSFDIVAGGAENKTLAELILSIKEDVASGGGFAASLRKHPKYFDELFCNLVESGEQSGALETMLDRIAMYKEKTE
QLKAKIKKAMTYPIAVLVVAVVVTGILLVKVVPQFAETFTSFGADLPAFTLFVLHLSELAQQYWFIILVTLIIFFVSFGK
LKSRSKAFRDFIDKISLKIPVVGNILYQSIVARFSRTLSTTFSAGVPLIDALLSVAGATGNSIYEKAVLQIREEVSTGTQ
LNVAINHTKVFPAMLVQMATIGEESGALDEMLDKVASYYEEAVDNLVDSLTSLLEPMIMSVLGILVGGLMIAMYLPIFQM
GQVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=961660 WKI13_RS07510 WP_018276441.1 1839363..1840577(-) (pilC) [Teredinibacter turnerae strain T7902]
ATGGCAACCGCAAGCTCCGAGCTATTTGTTTATAAAGGAGTCGATAAAAGAGGGAACAAAGTCAGTGGCGAAGTTTCCAG
TCAGAGTAGCGCAATGGCTAAAGCGCAACTACTGAAACAAGGAATTCGAGCAAACGCAGTTCGTAAGAAACCCAAACCTT
TGTTTAGTGGCGGCAAGAAAAAGATAACCCCTATGGATATTGCCTTATTTACAAGGCAAATGGCCACCATGATGAAGGCA
GGTGTTCCTCTTGTGCAAAGCTTTGATATCGTCGCAGGAGGCGCAGAAAACAAAACTCTAGCGGAATTAATTCTTTCAAT
TAAGGAAGATGTAGCTTCCGGTGGAGGGTTCGCGGCCTCATTACGCAAGCATCCCAAATATTTTGACGAATTATTTTGCA
ACCTAGTCGAATCTGGCGAACAATCCGGCGCCTTGGAAACAATGCTAGATCGGATTGCAATGTATAAGGAAAAAACAGAA
CAACTCAAAGCTAAAATTAAAAAGGCAATGACTTACCCTATAGCAGTACTCGTTGTAGCCGTTGTCGTTACCGGAATTTT
GTTAGTGAAAGTTGTGCCGCAGTTTGCAGAAACATTTACCAGTTTCGGTGCAGATTTACCTGCATTTACACTATTCGTGC
TTCACCTGTCTGAGCTTGCCCAGCAATACTGGTTTATCATACTGGTTACGCTTATCATTTTTTTCGTCAGCTTTGGCAAG
CTGAAATCCAGGAGCAAAGCATTTCGCGATTTCATTGATAAAATAAGTCTAAAAATACCCGTAGTAGGCAATATCCTTTA
CCAGTCAATTGTCGCTCGTTTTAGCAGGACGTTATCTACAACGTTTTCCGCCGGCGTTCCGCTGATAGATGCGCTGCTCT
CCGTGGCCGGCGCTACAGGCAACTCCATATACGAAAAGGCCGTTCTACAGATTAGGGAGGAAGTCTCCACCGGAACGCAG
TTAAACGTTGCAATCAATCACACAAAAGTGTTCCCTGCGATGCTAGTTCAAATGGCAACTATTGGAGAGGAGTCAGGAGC
ATTAGACGAAATGTTGGACAAAGTTGCATCTTACTACGAAGAAGCAGTAGACAACCTCGTCGATAGTTTGACCTCCTTGC
TGGAGCCGATGATCATGTCTGTTCTCGGCATACTGGTTGGTGGATTGATGATCGCTATGTACCTGCCAATATTCCAGATG
GGGCAGGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.657

98.762

0.619
  pilC Acinetobacter baylyi ADP1

60.804

98.515

0.599
  pilC Acinetobacter baumannii D1279779

60.957

98.267

0.599
  pilC Legionella pneumophila strain ERS1305867

58.081

98.02

0.569
  pilG Neisseria meningitidis 44/76-A

42.317

98.267

0.416
  pilG Neisseria gonorrhoeae MS11

42.317

98.267

0.416
  pilC Vibrio campbellii strain DS40M4

38.424

100

0.386
  pilC Vibrio cholerae strain A1552

38.131

98.02

0.374
  pilC Thermus thermophilus HB27

36.908

99.257

0.366