Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WJM57_RS02245 Genome accession   NZ_CP149127
Coordinates   446680..447921 (-) Length   413 a.a.
NCBI ID   WP_021140339.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain BE4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441680..452921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM57_RS02215 - 442465..443649 (+) 1185 WP_339022383.1 tetratricopeptide repeat protein -
  WJM57_RS02220 mutT 443658..444065 (+) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  WJM57_RS02225 yacG 444143..444337 (-) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  WJM57_RS02230 zapD 444347..445069 (-) 723 WP_021140336.1 cell division protein ZapD -
  WJM57_RS02235 coaE 445107..445721 (-) 615 WP_005314164.1 dephospho-CoA kinase -
  WJM57_RS02240 pilD 445741..446616 (-) 876 WP_087756647.1 A24 family peptidase Machinery gene
  WJM57_RS02245 pilC 446680..447921 (-) 1242 WP_021140339.1 type II secretion system F family protein Machinery gene
  WJM57_RS02250 pilB 448054..449760 (-) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WJM57_RS02255 - 449764..450165 (-) 402 WP_125608516.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WJM57_RS02260 nadC 450501..451358 (-) 858 WP_021139036.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WJM57_RS02265 - 451363..451833 (-) 471 WP_198315355.1 retropepsin-like aspartic protease -
  WJM57_RS02270 ampD 451983..452555 (+) 573 WP_339022391.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45325.42 Da        Isoelectric Point: 9.7813

>NTDB_id=956704 WJM57_RS02245 WP_021140339.1 446680..447921(-) (pilC) [Aeromonas salmonicida strain BE4]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQDWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=956704 WJM57_RS02245 WP_021140339.1 446680..447921(-) (pilC) [Aeromonas salmonicida strain BE4]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTACAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCACTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCTGGCGCCCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATTTTCAAAAGCTTTGGTGCCGAGC
TGCCCATATTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGGATTGGTGGTATGTGATTTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTACGAGCCTGGCGCGCGTCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATATTGCACAAGGCGGCCATGGCCCGATTTGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCTGGAGCTTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGATT
TGGTCGACGGTCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.287

97.821

0.453
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366