Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WJM57_RS02240 Genome accession   NZ_CP149127
Coordinates   445741..446616 (-) Length   291 a.a.
NCBI ID   WP_087756647.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain BE4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440741..451616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM57_RS02215 - 442465..443649 (+) 1185 WP_339022383.1 tetratricopeptide repeat protein -
  WJM57_RS02220 mutT 443658..444065 (+) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  WJM57_RS02225 yacG 444143..444337 (-) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  WJM57_RS02230 zapD 444347..445069 (-) 723 WP_021140336.1 cell division protein ZapD -
  WJM57_RS02235 coaE 445107..445721 (-) 615 WP_005314164.1 dephospho-CoA kinase -
  WJM57_RS02240 pilD 445741..446616 (-) 876 WP_087756647.1 A24 family peptidase Machinery gene
  WJM57_RS02245 pilC 446680..447921 (-) 1242 WP_021140339.1 type II secretion system F family protein Machinery gene
  WJM57_RS02250 pilB 448054..449760 (-) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WJM57_RS02255 - 449764..450165 (-) 402 WP_125608516.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WJM57_RS02260 nadC 450501..451358 (-) 858 WP_021139036.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32511.76 Da        Isoelectric Point: 6.7365

>NTDB_id=956703 WJM57_RS02240 WP_087756647.1 445741..446616(-) (pilD) [Aeromonas salmonicida strain BE4]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQTEYRSYFSSDTPQPEDDERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=956703 WJM57_RS02240 WP_087756647.1 445741..446616(-) (pilD) [Aeromonas salmonicida strain BE4]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGACCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGATGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGTAATCAC
CCCATAACAGCACTGGAAAACATTCCCCTTCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCAGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACTTTGCCGCTGCTGTGGGGCGGGCTGCTGTTCAACCTGCTGGGCGGATACGTGCCTCTCGGCGATGCGGTCAT
CGGTGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCTATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(140-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.764

98.969

0.601
  pilD Vibrio campbellii strain DS40M4

55.556

98.969

0.55
  pilD Acinetobacter baumannii D1279779

55.39

92.44

0.512
  pilD Acinetobacter nosocomialis M2

55.39

92.44

0.512
  pilD Neisseria gonorrhoeae MS11

50.746

92.096

0.467