Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NFHSH190041_RS17610 Genome accession   NZ_AP026070
Coordinates   3954618..3955880 (+) Length   420 a.a.
NCBI ID   WP_261923013.1    Uniprot ID   -
Organism   Shewanella sp. NFH-SH190041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3949618..3960880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFHSH190041_RS17585 (NFHSH190041_33520) nadC 3950154..3951014 (+) 861 WP_261923008.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NFHSH190041_RS17590 - 3951138..3951290 (+) 153 WP_261923009.1 hypothetical protein -
  NFHSH190041_RS17595 - 3951454..3951639 (+) 186 WP_261923010.1 hypothetical protein -
  NFHSH190041_RS17600 (NFHSH190041_33530) - 3952428..3952862 (+) 435 WP_261923011.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NFHSH190041_RS17605 (NFHSH190041_33540) pilB 3952862..3954571 (+) 1710 WP_261923012.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NFHSH190041_RS17610 (NFHSH190041_33550) pilC 3954618..3955880 (+) 1263 WP_261923013.1 type II secretion system F family protein Machinery gene
  NFHSH190041_RS17615 (NFHSH190041_33560) pilD 3955956..3956873 (+) 918 WP_261923014.1 prepilin peptidase Machinery gene
  NFHSH190041_RS17620 (NFHSH190041_33570) coaE 3956934..3957554 (+) 621 WP_261923015.1 dephospho-CoA kinase -
  NFHSH190041_RS17625 (NFHSH190041_33580) zapD 3957551..3958282 (+) 732 WP_261923016.1 cell division protein ZapD -
  NFHSH190041_RS17630 (NFHSH190041_33590) yacG 3958337..3958555 (+) 219 WP_261923017.1 DNA gyrase inhibitor YacG -
  NFHSH190041_RS17635 (NFHSH190041_33600) mutT 3958552..3958950 (+) 399 WP_261923018.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45855.97 Da        Isoelectric Point: 10.3283

>NTDB_id=95669 NFHSH190041_RS17610 WP_261923013.1 3954618..3955880(+) (pilC) [Shewanella sp. NFH-SH190041]
MNTAVAGKSKSRKKSPKNQPKIYTYEWKGLNRDGRKSAGEFRGSSVMEVRSQLKLQGISPKSVRKKSAPLFKSEKKINAM
DIAMVTRQIATMLAAGVPLVTTLELLGRGHEKPKMRALLTNIVAEVQSGVPLSDALRPQRQYFDDLYVDLVAAGEHSGAL
DQVFDRIATYKEKAEALKSKIKKAMFYPAAVVVVAIGVTALLLLMVVPQFEEIFKGFGAELPAFTQLIINISKALQATWY
FFAAGIIAAVWTFRRAHRNAQAVRDRTDELILKTPAIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
NALLKIRQDVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTL
VGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=95669 NFHSH190041_RS17610 WP_261923013.1 3954618..3955880(+) (pilC) [Shewanella sp. NFH-SH190041]
ATGAATACTGCCGTTGCCGGTAAGAGTAAGTCCCGTAAAAAATCGCCGAAGAACCAACCTAAAATTTATACCTACGAGTG
GAAAGGGCTAAACCGGGATGGGCGCAAATCTGCTGGCGAGTTTCGCGGTTCATCGGTAATGGAAGTCCGCAGTCAGCTAA
AATTGCAGGGAATTAGCCCCAAAAGCGTGCGAAAAAAAAGTGCCCCGCTGTTTAAAAGTGAGAAAAAAATTAATGCCATG
GATATCGCCATGGTTACCCGACAAATTGCCACCATGCTGGCGGCAGGGGTACCGCTCGTCACGACGCTTGAGTTGCTGGG
CCGCGGCCATGAAAAACCCAAAATGCGGGCACTACTGACCAACATAGTAGCAGAGGTACAGTCCGGTGTTCCGTTATCCG
ATGCCCTGCGCCCTCAGCGACAATATTTTGATGATTTGTATGTCGATCTTGTTGCTGCCGGGGAGCATTCCGGCGCGTTA
GATCAGGTATTCGACCGCATTGCCACTTATAAAGAAAAAGCCGAGGCGCTGAAATCTAAAATCAAAAAAGCCATGTTCTA
TCCTGCTGCAGTAGTGGTTGTCGCCATAGGCGTTACAGCACTGCTATTACTTATGGTCGTGCCACAATTTGAGGAAATTT
TTAAAGGATTTGGCGCTGAACTGCCAGCATTTACTCAGCTCATTATCAATATTTCCAAAGCATTGCAGGCAACTTGGTAT
TTCTTTGCGGCTGGCATTATCGCTGCCGTATGGACATTTCGCCGCGCGCACCGCAATGCTCAAGCCGTGCGCGATCGAAC
TGATGAGCTAATTTTAAAAACTCCGGCTATCGGCGATATTCTGCATAAAGCGGCAATGGCTCGTTTTGCCCGTACACTAG
CGACCACTTTTGCCGCAGGTGTACCACTTATTGACGGCTTAGAAAGTGCCGCGGGCGCATCAGGTAATGCGGTATACCGC
AACGCGCTGCTAAAAATCCGGCAAGATGTCATGGCAGGTATGCAGATGAATGTTGCAATGCGCACGACCAAGCTCTTTCC
CGATATGCTCATCCAAATGGTGATGATCGGTGAGGAGTCCGGCTCGCTGGATAATATGCTCAACAAAATTGCCAATATTT
ATGAGATGCAGGTCGATGATGCCGTCGATGGTCTATCCAGCCTGATAGAGCCGATAATGATGGTTGTTATCGGAACCCTA
GTCGGAGGATTAATTGTTGGTATGTATTTGCCTATCTTCCAGATGGGAAATGTCGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.709

94.048

0.533
  pilC Acinetobacter baylyi ADP1

50.882

94.524

0.481
  pilC Acinetobacter baumannii D1279779

50

94.762

0.474
  pilC Legionella pneumophila strain ERS1305867

48.267

96.19

0.464
  pilC Vibrio cholerae strain A1552

48.363

94.524

0.457
  pilC Vibrio campbellii strain DS40M4

44.527

95.714

0.426
  pilG Neisseria meningitidis 44/76-A

42.64

93.81

0.4
  pilG Neisseria gonorrhoeae MS11

42.64

93.81

0.4

Multiple sequence alignment