Detailed information NTG0095670

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NFHSH190041_RS17615
• Genome accession: NZ_AP026070
• Coordinates: 3955956..3956873 (+)
• Length: 305 a.a.
• NCBI ID: WP_261923014.1
• Uniprot ID: -
• Organism: Shewanella sp. NFH-SH190041
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3950956..3961873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NFHSH190041_RS17590	-	3951138..3951290 (+)	153	WP_261923009.1	hypothetical protein	-
NFHSH190041_RS17595	-	3951454..3951639 (+)	186	WP_261923010.1	hypothetical protein	-
NFHSH190041_RS17600 (NFHSH190041_33530)	-	3952428..3952862 (+)	435	WP_261923011.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NFHSH190041_RS17605 (NFHSH190041_33540)	pilB	3952862..3954571 (+)	1710	WP_261923012.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NFHSH190041_RS17610 (NFHSH190041_33550)	pilC	3954618..3955880 (+)	1263	WP_261923013.1	type II secretion system F family protein	Machinery gene
NFHSH190041_RS17615 (NFHSH190041_33560)	pilD	3955956..3956873 (+)	918	WP_261923014.1	prepilin peptidase	Machinery gene
NFHSH190041_RS17620 (NFHSH190041_33570)	coaE	3956934..3957554 (+)	621	WP_261923015.1	dephospho-CoA kinase	-
NFHSH190041_RS17625 (NFHSH190041_33580)	zapD	3957551..3958282 (+)	732	WP_261923016.1	cell division protein ZapD	-
NFHSH190041_RS17630 (NFHSH190041_33590)	yacG	3958337..3958555 (+)	219	WP_261923017.1	DNA gyrase inhibitor YacG	-
NFHSH190041_RS17635 (NFHSH190041_33600)	mutT	3958552..3958950 (+)	399	WP_261923018.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 34111.51 Da
• Isoelectric Point: 6.0752

>NTDB_id=95670 NFHSH190041_RS17615 WP_261923014.1 3955956..3956873(+) (pilD) [Shewanella sp. NFH-SH190041]
MSDFIYLLDIYPWLFMLLSFIFAAAIGSFLNVVIHRLPIMLKREWQQECQGYLEQYHADTLSPAQLSTLGKVNDGYPEKY
NLVIPGSACPQCGHKITAWQNMPILSWLFLRGKCASCQKAIPARYPLVELFTGIAVAVLAWHFGPSMQFVFATILTFALI
ALTFIDLDEMLLPDQITLPLLWLGLLINYQGVFSDLSDAVIGATAGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAVFGAW
LGWQLLPLTILLSSLVGAIVGITLIISKRINVGNPIPFGPYIALAGWIAMIWGTDIISWYLNYLL

Nucleotide

• Length: 918 bp

>NTDB_id=95670 NFHSH190041_RS17615 WP_261923014.1 3955956..3956873(+) (pilD) [Shewanella sp. NFH-SH190041]
ATGTCTGATTTTATTTATCTGCTCGACATTTACCCTTGGCTGTTTATGTTACTCAGCTTTATTTTTGCTGCAGCAATCGG
TAGCTTTCTCAACGTGGTTATCCATCGGCTTCCCATCATGCTGAAGCGGGAATGGCAGCAAGAATGCCAAGGTTATCTGG
AACAGTACCATGCAGACACATTATCCCCAGCGCAATTATCTACATTGGGTAAGGTAAATGATGGTTATCCCGAAAAGTAC
AACCTGGTAATACCCGGCTCAGCCTGCCCTCAATGCGGACATAAAATAACAGCGTGGCAAAATATGCCTATTCTTAGTTG
GCTATTCCTGCGGGGAAAGTGCGCTTCCTGCCAAAAGGCAATCCCAGCACGTTACCCGCTCGTTGAGTTATTCACGGGTA
TCGCTGTGGCAGTATTAGCTTGGCATTTTGGTCCTAGTATGCAGTTTGTATTTGCCACCATACTGACCTTTGCTTTAATC
GCCCTGACCTTTATCGATTTAGATGAAATGTTATTACCGGATCAAATCACCTTACCTCTGTTATGGCTGGGATTATTGAT
TAATTATCAAGGTGTTTTCAGCGACCTCTCGGATGCAGTTATTGGCGCAACAGCAGGTTATCTTAGTCTCTGGTCTATTT
TCTGGTTATTTAAATTACTGACCGGCAAAGAAGGGATGGGCTACGGAGACTTTAAATTACTCGCCGTGTTTGGTGCTTGG
CTGGGCTGGCAGCTATTACCATTAACGATATTACTATCATCTTTAGTGGGCGCTATCGTTGGTATTACTCTGATAATCTC
CAAGCGTATTAATGTCGGTAATCCAATACCTTTTGGACCTTATATTGCGCTGGCAGGTTGGATAGCCATGATATGGGGTA
CTGATATTATTTCTTGGTATCTTAATTATTTACTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.007	97.705	0.498
pilD	Vibrio campbellii strain DS40M4	51.014	97.049	0.495
pilD	Acinetobacter nosocomialis M2	50.903	90.82	0.462
pilD	Acinetobacter baumannii D1279779	50.542	90.82	0.459
pilD	Neisseria gonorrhoeae MS11	44.291	94.754	0.42