Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WHX55_RS26665 Genome accession   NZ_CP148752
Coordinates   5861935..5863152 (+) Length   405 a.a.
NCBI ID   WP_151214145.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5856935..5868152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS26645 (WHX55_26615) - 5857236..5860193 (+) 2958 WP_150727062.1 DUF748 domain-containing protein -
  WHX55_RS26650 (WHX55_26620) - 5860193..5860489 (+) 297 WP_223446861.1 DUF2845 domain-containing protein -
  WHX55_RS26655 (WHX55_26625) - 5860629..5860985 (-) 357 WP_150757729.1 BON domain-containing protein -
  WHX55_RS26660 (WHX55_26630) - 5861285..5861707 (-) 423 WP_150757730.1 pilin -
  WHX55_RS26665 (WHX55_26635) pilC 5861935..5863152 (+) 1218 WP_151214145.1 type II secretion system F family protein Machinery gene
  WHX55_RS26670 (WHX55_26640) pilD 5863154..5864026 (+) 873 WP_353741595.1 A24 family peptidase Machinery gene
  WHX55_RS26675 (WHX55_26645) coaE 5864023..5864646 (+) 624 WP_353741596.1 dephospho-CoA kinase -
  WHX55_RS26680 (WHX55_26650) yacG 5864643..5864843 (+) 201 WP_007970539.1 DNA gyrase inhibitor YacG -
  WHX55_RS26685 (WHX55_26655) - 5864878..5865567 (-) 690 WP_150727090.1 energy-coupling factor ABC transporter permease -
  WHX55_RS26690 (WHX55_26660) - 5865639..5866571 (-) 933 WP_151214147.1 LysR family transcriptional regulator -
  WHX55_RS26695 (WHX55_26665) - 5866693..5866935 (+) 243 WP_057713259.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44220.18 Da        Isoelectric Point: 10.2572

>NTDB_id=955454 WHX55_RS26665 WP_151214145.1 5861935..5863152(+) (pilC) [Pseudomonas fluorescens strain AB1]
MAVKAAKISVYAWEGIDRKGTKVTGELSAQNPALIKAKLRKQGISPGKVRKKNHSVFNMGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDELKQEVAAGSSFAAALRKKPRYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKARIRKAMTYPLVVVFVAAIVTGILLVNVVPQFESVFKGFGAELPAFTVMVIGLSQFMQAWWWVVLGALVTTAFGVR
HALRTSPAFRDRMDTWLLKLPLVGTLMHKSAVARFARTLSTTFAAGVPLVEALESVAGATGNVVFKRAVLRIRQDISTGM
QLHFAMRTCGVFPNMAIQMTAIGEESGTLDAMLDKVAGFYEDNVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=955454 WHX55_RS26665 WP_151214145.1 5861935..5863152(+) (pilC) [Pseudomonas fluorescens strain AB1]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTGTATGCATGGGAAGGCATCGACCGCAAAGGCACAAAAGTGACCGGCGAACT
CAGCGCTCAAAACCCGGCGCTGATCAAGGCGAAACTGCGCAAGCAAGGCATCAGTCCCGGCAAGGTCCGCAAGAAAAACC
ATTCGGTGTTCAACATGGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACGATGATGAAG
GCCGGGGTGCCGTTGTTGCAGTCCTTCGACATCATCGGCGAGGGCTTCGACAATCCGGCCATGCGCAAGCTGGTGGACGA
ACTGAAACAGGAAGTTGCGGCAGGCAGCAGCTTCGCCGCCGCCCTGCGCAAGAAGCCCCGGTATTTCGATGAGCTGTATT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGTGCCCTCGACACCCTTTTGGAGCGGGTCGCGACCTACAAGGAAAAAAGC
GAAAGCCTCAAGGCCAGGATCAGGAAAGCCATGACCTACCCGCTGGTCGTGGTGTTCGTCGCGGCAATTGTCACCGGGAT
TCTTCTGGTCAATGTCGTGCCGCAGTTCGAGTCGGTGTTCAAAGGCTTTGGTGCAGAACTGCCGGCCTTCACCGTAATGG
TCATTGGCCTGTCGCAATTCATGCAGGCCTGGTGGTGGGTGGTCCTTGGCGCGCTGGTCACCACGGCCTTCGGCGTGCGC
CACGCCCTCAGGACATCCCCGGCCTTCCGTGACCGGATGGATACCTGGCTGCTGAAACTGCCGCTGGTGGGCACCCTGAT
GCACAAGTCCGCCGTGGCCCGGTTCGCCCGTACACTGTCGACCACTTTTGCTGCCGGCGTGCCGCTGGTGGAGGCCCTGG
AATCAGTGGCCGGTGCGACCGGCAATGTCGTGTTCAAGCGCGCGGTATTGCGCATCCGGCAGGACATCTCGACCGGCATG
CAATTGCATTTCGCCATGCGTACCTGCGGCGTCTTTCCGAACATGGCGATACAAATGACCGCCATCGGCGAAGAGTCAGG
CACCCTGGACGCTATGCTCGACAAAGTCGCGGGGTTCTACGAAGACAACGTCGATAATATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGACTGGTAGTTGCCATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

70.864

100

0.709
  pilC Acinetobacter baumannii D1279779

56.863

100

0.573
  pilC Acinetobacter baylyi ADP1

56.618

100

0.57
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilG Neisseria meningitidis 44/76-A

42.222

100

0.422
  pilG Neisseria gonorrhoeae MS11

42.537

99.259

0.422
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

37.905

99.012

0.375