Detailed information NTG0955455

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WHX55_RS26670
• Genome accession: NZ_CP148752
• Coordinates: 5863154..5864026 (+)
• Length: 290 a.a.
• NCBI ID: WP_353741595.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain AB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5858154..5869026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHX55_RS26650 (WHX55_26620)	-	5860193..5860489 (+)	297	WP_223446861.1	DUF2845 domain-containing protein	-
WHX55_RS26655 (WHX55_26625)	-	5860629..5860985 (-)	357	WP_150757729.1	BON domain-containing protein	-
WHX55_RS26660 (WHX55_26630)	-	5861285..5861707 (-)	423	WP_150757730.1	pilin	-
WHX55_RS26665 (WHX55_26635)	pilC	5861935..5863152 (+)	1218	WP_151214145.1	type II secretion system F family protein	Machinery gene
WHX55_RS26670 (WHX55_26640)	pilD	5863154..5864026 (+)	873	WP_353741595.1	A24 family peptidase	Machinery gene
WHX55_RS26675 (WHX55_26645)	coaE	5864023..5864646 (+)	624	WP_353741596.1	dephospho-CoA kinase	-
WHX55_RS26680 (WHX55_26650)	yacG	5864643..5864843 (+)	201	WP_007970539.1	DNA gyrase inhibitor YacG	-
WHX55_RS26685 (WHX55_26655)	-	5864878..5865567 (-)	690	WP_150727090.1	energy-coupling factor ABC transporter permease	-
WHX55_RS26690 (WHX55_26660)	-	5865639..5866571 (-)	933	WP_151214147.1	LysR family transcriptional regulator	-
WHX55_RS26695 (WHX55_26665)	-	5866693..5866935 (+)	243	WP_057713259.1	DUF2790 domain-containing protein	-
WHX55_RS26700 (WHX55_26670)	-	5866944..5868212 (-)	1269	WP_353741597.1	OprD family porin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32081.32 Da
• Isoelectric Point: 8.0671

>NTDB_id=955455 WHX55_RS26670 WP_353741595.1 5863154..5864026(+) (pilD) [Pseudomonas fluorescens strain AB1]
MPLNEILIHSALAFVLLAGITGLLVGSFLNVVIWRLPKMLERDWREQAHDILGLPGETPLPTYNLLLPHSQCPHCGHRIR
AWENIPLLSYVFLRGRCSACKAAISPRYPLTELACGLLSAFVAWHFGFGWPAALVLVLSWGLLAMSLIDAEHQILPDVLV
LPLIWLGLIVNSFGLFVSLHEALWGAIAGYGLLWSVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGLILLRWRNAKTSTPIPFGPYLAIAGWIALLWGGQITDLYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=955455 WHX55_RS26670 WP_353741595.1 5863154..5864026(+) (pilD) [Pseudomonas fluorescens strain AB1]
ATGCCCTTGAATGAAATCCTGATTCACTCTGCGCTGGCCTTTGTCCTTCTCGCAGGCATCACCGGCCTGCTGGTCGGCAG
TTTCCTCAATGTCGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGTGAGCAGGCCCATGACATTCTCGGGC
TGCCTGGCGAAACGCCGCTGCCGACCTACAACCTGTTGCTGCCCCACTCCCAGTGCCCGCACTGCGGTCACCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATGTGTTTTTGCGCGGCCGCTGCTCAGCCTGTAAGGCAGCGATCAGCCCGCG
CTATCCGTTGACCGAACTGGCCTGCGGGCTGCTGTCGGCGTTTGTTGCCTGGCACTTCGGCTTTGGTTGGCCGGCCGCCC
TGGTACTGGTCCTGAGCTGGGGGTTGCTGGCGATGAGCCTGATCGACGCCGAACATCAGATATTGCCGGACGTACTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGTCGTTGCACGAGGCGCTTTGGGGGGCGAT
CGCCGGCTACGGCCTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGACGGCATGGGCTACGGTGATT
TCAAGCTGCTGGCGATGCTGGGTGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACCATCCTGCTGTCCTCGCTGGTAGGT
GCCATTATCGGGCTGATCCTGCTGCGCTGGCGCAATGCAAAAACCTCGACGCCGATCCCTTTTGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACCTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.311	94.138	0.521
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	48.746	96.207	0.469
pilD	Acinetobacter nosocomialis M2	48.746	96.207	0.469
pilD	Neisseria gonorrhoeae MS11	50.388	88.966	0.448